abacas/
abyss/
acedb-other-belvu/
acedb-other-dotter/
acedb-other/
adapterremoval/
adun-core/
adun.app/
aegean/
aeskulap/
aevol/
aghermann/
alien-hunter/
aliscore/
allcatchr/
alter-sequence-alignment/
altree/
amap-align/
amide/
ampliconnoise/
andi/
anfo/
aragorn/
arden/
ariba/
art-nextgen-simulation-tools-profiles/
art-nextgen-simulation-tools/
artemis/
artfastqgenerator/
assemblytics/
atac/
augustus-data/
augustus/
autoclassweb/
autodock-getdata/
autodock-test/
autodock-vina/
autodock/
autogrid-test/
autogrid/
avivator/
avro/
axe-demultiplexer/
baitfisher/
bali-phy/
ball/
ballview/
bamdst/
bamtools/
bandage/
barrnap/
bart-view/
bart/
bcbio/
bcftools/
beads/
beagle/
beast-mcmc/
beast2-mcmc/
bedops/
bedtools-test/
bedtools/
belvu/
berkeley-express/
bio-eagle/
bio-rainbow/
bio-tradis/
biocontainers/
biom-format-tools/
biom-format/
biomaj3-cli/
biomaj3-core/
biomaj3-daemon/
biomaj3-download/
biomaj3-process/
biomaj3-user/
biomaj3-zipkin/
biomaj3/
bioperl-run/
bioperl/
biopython-sql/
biopython/
bior_annotate/
biosql/
biosquid/
biosyntax-common/
biosyntax-gedit/
biosyntax-less/
biosyntax-vim/
biosyntax/
biotools/
bitseq/
blasr/
blast/
blast2/
blaze/
blixem/
bolt-lmm-example/
bolt-lmm/
bowtie/
bowtie2/
boxshade/
bppphyview/
bppsuite/
brig/
burrito/
bwa/
bwakit/
bx-tools/
bx/
bz2file/
cadd-scripts-with-envs/
cain-solvers/
cain/
camitk-actionstatemachine/
camitk-config/
camitk-imp/
canu/
cassiopee/
cava/
ccmetagen/
cct/
cd-hit/
cdbfasta/
cellpose/
cellprofiler/
centrifuge/
cfflib/
cgview/
changeo/
chimeraslayer/
chromhmm-example/
chromhmm/
chromimpute/
circlator/
circos-tools/
circos/
clearcut/
clips/
clonalframe/
clonalframeml/
clonalorigin/
clustal-omega/
clustalo/
clustalw/
clustalx/
cnvkit/
cobra-data/
cobra/
codonw/
cogent/
colormap/
colormath/
comet/
concavity/
conodictor/
consensuscore2/
conservation-code/
control-freec/
coregenebuilder/
corepywrap/
cpat/
crac/
crux/
csb/
ctdconverter/
ctdopts/
ctn-dev/
ctn/
ctsim-help/
ctsim/
cutadapt/
cwltool/
cycle/
cyvcf2/
daligner/
danpos/
dascrubber/
dask/
dawg/
dazzdb/
dcm2niix/
dcmtk/
deepgoplus/
deepnano-data/
deepnano/
delly/
dendropy/
denovogui/
depinfo/
dia-umpire/
dialign-tx-data/
dialign-tx/
dialign/
diamond-aligner/
diann/
dicom3tools/
dicompyler/
dicomscope/
diffexpir/
dindel/
discosnp/
disulfinder-data/
disulfinder/
dnaclust/
dotter/
dssp/
dwgsim/
e-mem/
ea-utils/
easydev/
ecopcr/
edfbrowser/
edlib-aligner/
edlib/
edtsurf/
eido/
eigensoft/
elastix/
elph/
embassy-domainatrix/
embassy-domalign/
embassy-domsearch/
emboss-data/
emboss-explorer/
emboss-lib/
emboss-test/
emboss/
entrez-direct/
eosc-pilot/
estscan/
evidential-gene/
examl/
exonerate/
falcon-ms/
famli/
fast5/
fastahack/
fastaq/
fastdnaml/
fastlink/
fastml/
fastp/
fastqc/
fastqtl/
fasttree/
fastx-toolkit/
fastxtools/
ffindex/
figtree/
fis-gtm-6.3-007/
fis-gtm/
fitbit/
fitgcp/
flexbar/
fml-asm/
frc_align/
freebayes/
freecontact/
freediams-doc-en/
freediams-doc-fr/
freediams/
fsa/
fsm-lite/
fw4spl/
galileo-daemon/
galileo/
gapcloser/
garli-mpi/
garli/
gasic/
gatb-core-testdata/
gatb-core/
gbrowse-calign/
gbrowse-data/
gbrowse/
gcta/
gdcm/
gdpc/
gemma/
geneocr-api/
geneocr-ui/
genometester/
genometools-common/
genometools/
gentle/
getdata/
gfapy/
gff2aplot/
gff2ps/
gffutils/
ghmm/
giira/
ginkgocadx/
glam2/
gnumed-client-de/
gnumed-client/
gnumed-common/
gnumed-server/
golang-github-dataence-porter2-dev/
grabix/
graphlan/
grinder/
gubbins/
gwama/
gwas-fasp/
gwyddion-common/
gwyddion-plugins/
gwyddion/
hap-ibd/
harvest-tools/
hdmedians/
hhsuite-data/
hhsuite/
hifiadapterfilt/
hilive/
hinge/
hisat2/
hl7/
hmmer/
hmmer2-pvm/
hmmer2/
htseq/
htslib-test/
htslib/
hunspell-de-med/
hunspell-en-med/
hyphy-common/
hyphy-mpi/
hyphy-pt/
idba/
igor/
ilastik/
imagej/
imagevis3d/
imputeme/
indelible/
infernal/
insighttoolkit4-python/
integron-finder/
interproscan/
intervaltree-bio/
invesalius-bin/
invesalius/
ipig/
iqtree/
isee-galaxy/
ismrmrd-schema/
ismrmrd-tools/
iva/
jaligner/
jbrowse/
jellyfish/
jellyfish1/
jemboss/
jmodeltest/
kalign/
kast/
khmer-common/
khmer/
kineticstools-data/
kineticstools/
king-probe/
king/
kissplice/
kmc/
kmer/
kraken/
krona/
lagan/
lamarc/
lambda-align/
lambda-align2/
last-align/
leaff/
lefse/
logol-bin/
logol/
loki/
longranger/
ltrsift/
lucy/
lzstring/
mace/
macs/
macsyfinder/
maffilter/
mafft/
magicblast/
mapdamage/
mapsembler2/
maq/
maqview/
maracluster/
mash/
matplotlib-venn/
maude/
mauve-aligner/
mcl/
medcon/
megahit/
melting/
mencal/
meryl/
metaphlan2-data/
metaphlan2/
metastudent-data-2/
metastudent-data/
metastudent/
mhap/
mia-doctools/
mia-tools/
mia-viewit/
mia/
mialmpick/
microbegps/
microbiomeutil-data/
microbiomeutil/
minc-tools/
minia/
miniasm/
minimac4/
minimap/
minimap2/
mipe/
mira-assembler/
mira-rfam-12s-rrna/
mitohifi/
mlv-smile/
mne/
mobyle-programs/
mobyle-tutorials/
mobyle-utils/
mobyle/
mothur/
mptp/
mrbayes-mpi/
mrbayes/
mriconvert/
mrs/
msamanda/
msgfp/
msisensor2/
multipletau/
mummer/
murasaki-common/
murasaki-mpi/
murasaki/
muscle/
mustang-testdata/
mustang/
mypy-extensions/
mypy/
nanook/
nanopolish/
nanosv/
nast-ier/
ncbi-blast-plus-legacy/
ncbi-blast-plus/
ncbi-data/
ncbi-datasets-cli/
ncbi-entrez-direct/
ncbi-epcr/
ncbi-rrna-data/
ncbi-seg/
ncbi-tools-bin/
ncbi-tools-x11/
ncl-tools/
ncoils/
neobio/
ngs/
njplot/
norsnet/
norsp/
novor/
nutsqlite/
obitools/
octave-bart/
odil/
oncocnv/
openbugs/
opencfu/
openms/
openslide-tools/
openslide/
orthanc-dev/
orthanc-dicomweb/
orthanc-imagej/
orthanc-mysql/
orthanc-postgresql/
orthanc-webviewer/
orthanc-wsi/
orthanc/
pal2nal/
paleomix/
paml/
pandas/
paraclu/
parafly/
parsinsert-testdata/
parsinsert/
parsnp/
partitionfinder2/
patchwork/
patman/
pbalign/
pbbamtools/
pbbanana/
pbbarcode/
pbcommand/
pbconsensuscore/
pbcore/
pbdagcon/
pbgenomicconsensus/
pbh5tools/
pbhoney/
pbjelly/
pbsim/
pbsuite-utils/
pbsuite/
pcalendar/
pdb2pqr/
pepnovo/
peptideprophet/
peptideshaker/
percolator/
perlprimer/
perm/
pftools/
phast/
philosopher/
phipack/
phybin/
phylip/
phylotools/
phyml/
physamp/
phyutility/
phyx/
pia/
picard-tools/
picard/
piler/
pilon/
pipdeptree/
pirs-profiles/
pirs/
pixelmed-apps/
pixelmed-webstart-apps/
pixelmed-www/
placnet/
plasmidomics/
plasmidseeker/
plast-example/
plast/
plastimatch/
plink/
plink1.9/
plip/
poa/
pondus/
populations/
porechop/
poretools-data/
poretools/
pp-popularity-contest/
praat/
prank/
predictnls/
prime-phylo/
primer3/
proalign/
probabel/
probalign/
probcons-extra/
probcons/
proda/
prodigal/
profbval/
profisis/
profnet-bval/
profnet-chop/
profnet-con/
profnet-isis/
profnet-md/
profnet-norsnet/
profnet-prof/
profnet-snapfun/
profphd-net/
profphd-utils/
profphd/
proftmb/
progressivemauve/
proteinortho/
proteinprophet/
proteowizard/
prottest/
pscan-chip-data/
pscan-chip/
pscan-tfbs/
psortb/
pvrg-jpeg/
pybedtools-bin/
pybedtools/
pycorrfit/
pyfaidx/
pyflow/
pymol-jupiter/
pymummer/
pynast/
pyqi/
pysam-tests/
pysam/
pyscanfcs/
pyvcf/
qcli/
qcumber/
qrisk2/
qsopt-ex/
qtltools-example/
qtltools/
quorum/
r-metamix/
racon/
radiant/
rambo-k/
rampler/
rapmap-dev/
rapmap-example-data/
rapmap/
raremetalworker/
raster3d/
rate4site/
raxml/
ray-extra/
ray/
rdflib-jsonld/
rdp-alignment/
rdp-classifier/
rdp-readseq/
readseq/
reapr/
relion-bin-plusgui/
relion-bin-plusmpi-plusgui/
relion-bin-plusmpi/
relion-bin/
repeatmasker-recon/
reprof/
rna-star/
rnahybrid/
roary/
roguenarok/
rpg/
rsat/
rsem/
rtax/
ruby-rgfa/
ruffus/
runcircos-gui/
saint/
saintq/
salmid/
salmon/
samblaster/
samtools-test/
samtools/
sbml5/
sbmltoolbox/
schema-salad/
scoary/
screed/
scrm/
scythe/
seaborn/
searchgui/
seaview/
seer/
segemehl/
seq_crumbs/
seqan-apps/
seqan-dev/
seqmagick/
seqprep-data/
seqprep/
seqsero/
seqtk/
sga/
shotmap/
sibsim4/
sickle/
sigma-align/
sim4/
sim4db/
simpleitk/
sleepyhead/
smalr/
smalt/
smithwaterman/
snakemake/
snap-aligner/
snap/
sniffles/
snp-sites/
snpeff/
snpomatic/
soapaligner/
soapdenovo/
soapdenovo2/
soapec/
soapsnp/
sofa-apps/
sofa-data/
sofa-tutorials/
sortmerna/
spaced/
spades/
spark/
spectra-cluster-cli/
spectra/
sphinxcontrib-autoprogram/
sphinxcontrib.autoprogram/
spoa/
sprai/
spread-phy/
sqlsoup/
sqt/
squizz/
sra-toolkit/
srst2/
ssaha2/
ssake/
sspace/
ssw-align/
stacks-web/
stacks/
staden-common/
staden-io-lib-utils/
staden/
stitching-spark/
strelka/
subread-data/
subread/
suffixfsm/
suitename/
sumaclust/
sumatra/
sumtrees/
surankco/
swarm/
sweed/
t-coffee/
tabix/
talon/
tandem/
tantan/
telescoper/
test-ci/
theseus/
tifffile/
tigr-glimmer/
tm-align/
tnseq-transit/
toil/
tophat/
toppas/
toppred/
tpmcalculator/
tpp/