atlas/
bamtools/
bcftools/
bowtie/
bowtie2/
bwa/
cufflinks/
emboss/
fastx_toolkit/
freebayes/
ghostscript/
hisat/
kraken/
lastz/
meme/
openms/
pkiss/
R/
rmap/
rnashapes/
samtools/
sputnik/
stringtie/
tophat/
tpp/
ucsc/
ViennaRNA/
vcflib/