# DREME 4.10.0
# command:   dreme -v 1 -oc memechip_example_output_files/dreme_out -p memechip_example_output_files/seqs-centered -n memechip_example_output_files/seqs-shuffled -png
# host:      IMB12-010665
# when:      Tue Oct 07 17:17:31 EST 2014
# positives: 812
#      from: memechip_example_output_files/seqs-centered (Tue Oct 07 17:09:05 EST 2014)
# negatives: 812
#      from: memechip_example_output_files/seqs-shuffled (Tue Oct 07 17:09:06 EST 2014)


MEME version 4.10.0

ALPHABET= ACGT

strands: + -

Background letter frequencies (from dataset):
A 0.246 C 0.254 G 0.250 T 0.251

MOTIF GGGYGK DREME

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GGGYGK     MCRCCC        430        119   2.3e-062   7.4e-058
#           GGGTGT     ACACCC        200         49   1.0e-026   3.3e-022
#           GGGCGT     ACGCCC         96          9   6.9e-021   2.3e-016
#           GGGCGG     CCGCCC         69         11   3.5e-012   1.1e-007
#           GGGTGG     CCACCC        144         59   8.6e-011   2.8e-006

letter-probability matrix: alength= 4 w= 6 nsites= 549 E= 7.4e-058
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.306011 0.000000 0.693989
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.411658 0.588342


MOTIF TTATCW DREME

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      TTATCW     WGATAA        257         57   2.1e-038   6.5e-034
#           TTATCT     AGATAA        156         30   2.0e-024   6.3e-020
#           TTATCA     TGATAA        116         28   2.3e-015   7.4e-011

letter-probability matrix: alength= 4 w= 6 nsites= 287 E= 6.5e-034
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.432056 0.000000 0.000000 0.567944


MOTIF AGAWA DREME

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       AGAWA      TWTCT        306        211   2.6e-007   8.1e-003
#            AGATA      TATCT        129         66   9.3e-007   2.9e-002
#            AGAAA      TTTCT        213        156   4.5e-004   1.4e+001

letter-probability matrix: alength= 4 w= 5 nsites= 390 E= 8.1e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.635897 0.000000 0.000000 0.364103
1.000000 0.000000 0.000000 0.000000



Time 17.02 secs.
