| Database and Motifs | High-scoring Motif Occurrences | Debugging Information |
FIMO version 4.10.0, (Release date: Wed May 21 10:35:36 2014 +1000)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE
memechip_example_output_files/sample-dna-Klf1.fa
Database contains
904
sequences,
452000
residues
MOTIFS JASPAR_CORE_2009.meme (nucleotide)
| MOTIF | WIDTH | BEST POSSIBLE MATCH |
|---|---|---|
| MA0001.1 | 10 | CCATAAATAG |
| MA0002.1 | 11 | TATTGTGGTTA |
| MA0002.2 | 11 | GTCTGTGGTTT |
| MA0003.1 | 9 | GCCCGGGGG |
| MA0004.1 | 6 | CACGTG |
| MA0005.1 | 11 | CCAAATTTGGT |
| MA0006.1 | 6 | TGCGTG |
| MA0007.1 | 22 | ATAAGAACATCGTGTACCCGCC |
| MA0008.1 | 8 | CAATTATT |
| MA0009.1 | 11 | CTAGGTGTGAA |
| MA0010.1 | 14 | GTAATAAACAAATC |
| MA0011.1 | 8 | TACTATTT |
| MA0012.1 | 11 | TAAACTAAAAG |
| MA0013.1 | 11 | TAGTAAACAAA |
| MA0014.1 | 20 | AGAGCACTGAAGCGTAACGG |
| MA0015.1 | 10 | GTATATATAC |
| MA0016.1 | 10 | GGGGTCACGG |
| MA0017.1 | 14 | TGACCTTTGAACCT |
| MA0018.1 | 12 | CCTGGTGACGTC |
| MA0018.2 | 8 | TGACGTCA |
| MA0019.1 | 12 | AGATGCAATCCC |
| MA0020.1 | 6 | AAAGCA |
| MA0021.1 | 6 | AAAGCG |
| MA0022.1 | 12 | GGGGTTTTTCCG |
| MA0023.1 | 10 | GGGGTTTTCC |
| MA0024.1 | 8 | TTTGGCGC |
| MA0025.1 | 11 | TTATGTAACAT |
| MA0026.1 | 7 | CCGGAAG |
| MA0027.1 | 11 | AAGTAGTGTTC |
| MA0028.1 | 10 | GAGCCGGAAG |
| MA0029.1 | 14 | AAGATAAGATAATA |
| MA0030.1 | 14 | CAAACGTAAACAAT |
| MA0031.1 | 8 | GTAAACAT |
| MA0032.1 | 8 | GGTAAGTA |
| MA0033.1 | 8 | TATACATA |
| MA0034.1 | 10 | GACAACCGCC |
| MA0035.1 | 6 | GGATGG |
| MA0035.2 | 11 | ACAGATAAGAA |
| MA0036.1 | 5 | GGATA |
| MA0037.1 | 6 | AGATAG |
| MA0038.1 | 10 | CAAATCACTG |
| MA0039.1 | 10 | TAAAGGAAGG |
| MA0039.2 | 10 | TGGGTGGGGC |
| MA0040.1 | 11 | TATTGTTTATT |
| MA0041.1 | 12 | GAATGTTTGTTT |
| MA0042.1 | 12 | GGATGTTTGTTT |
| MA0043.1 | 12 | GGTTACGTAATT |
| MA0044.1 | 9 | GTTGTATTC |
| MA00445.1 | 11 | TCCATTGTTCT |
| MA0045.1 | 16 | CAACAAATGGAAAAAC |
| MA0046.1 | 14 | GGTTAATAATTAAC |
| MA0047.1 | 12 | CAATATTTACTT |
| MA0047.2 | 12 | TGTTTACTTAGG |
| MA0048.1 | 12 | GCGCAGCTGCGT |
| MA0049.1 | 10 | GCATAAAAAA |
| MA0050.1 | 12 | GAAAGTGAAACC |
| MA0051.1 | 18 | GGAAAGTGAAAGCAAAAC |
| MA0052.1 | 10 | CTATTTATAG |
| MA0053.1 | 5 | AAAGC |
| MA0054.1 | 9 | TAACCGTTT |
| MA0055.1 | 12 | CAGCAGCTGCTG |
| MA0056.1 | 6 | TGGGGA |
| MA0057.1 | 10 | GTAGGGGGAA |
| MA0058.1 | 10 | AACCACGTGA |
| MA0059.1 | 11 | GAGCACGTGGT |
| MA0060.1 | 16 | CTCAGCCAATCAGCGC |
| MA0061.1 | 10 | GGGAATTTCC |
| MA0062.1 | 10 | ACCGGAAGAG |
| MA0062.2 | 11 | CCGGAAGTGGC |
| MA0063.1 | 7 | TTAATTG |
| MA0064.1 | 5 | AAAGC |
| MA0065.1 | 20 | TTAGGGGTCAAAGGTCATCT |
| MA0065.2 | 15 | GTAGGGCAAAGGTCA |
| MA0066.1 | 20 | GTAGGTCACGGTGACCTACT |
| MA0067.1 | 8 | AGTCACGG |
| MA0068.1 | 30 | GAAAAATTTCCAATACTCCACTCCCCCCCC |
| MA0069.1 | 14 | TTCACGCATGAGTT |
| MA0070.1 | 12 | CCATCAATCAAA |
| MA0071.1 | 10 | ATCAAGGTCA |
| MA0072.1 | 14 | TATAAGTAGGTCAA |
| MA0073.1 | 20 | CCCCAAACCACCCCCCCCCA |
| MA0074.1 | 15 | GGGTCATCGAGTTCA |
| MA0075.1 | 5 | AATTA |
| MA0076.1 | 9 | ACCGGAAGT |
| MA0077.1 | 9 | GAACAATGG |
| MA0078.1 | 9 | TTCATTGTC |
| MA0079.1 | 10 | GGGGCGGGGT |
| MA0079.2 | 10 | CCCCGCCCCC |
| MA0080.1 | 6 | CGGAAG |
| MA0080.2 | 7 | AGGAAGT |
| MA0081.1 | 7 | AGAGGAA |
| MA0082.1 | 14 | CCAAAAATGGAAAT |
| MA0083.1 | 12 | GCCCATATATGG |
| MA0084.1 | 9 | GTAAACAAT |
| MA0085.1 | 16 | TTGTGGGAAACGAGAT |
| MA0086.1 | 6 | CAGGTG |
| MA0087.1 | 7 | TAACAAT |
| MA0088.1 | 20 | GATTTCCCATAATGCCTTGC |
| MA0089.1 | 6 | CATGAC |
| MA0090.1 | 12 | CACATTCCTCCG |
| MA0091.1 | 12 | CGACCATCTGTT |
| MA0092.1 | 10 | GGTCTGGCAT |
| MA0093.1 | 7 | CACGTGG |
| MA0094.1 | 4 | TAAT |
| MA0094.2 | 8 | TTTAATTA |
| MA0095.1 | 6 | GCCATC |
| MA0096.1 | 7 | ATGACGT |
| MA0097.1 | 12 | GATGACGTGGCC |
| MA0098.1 | 6 | TTTCCG |
| MA0099.1 | 8 | GTGAGTCA |
| MA0099.2 | 7 | TGACTCA |
| MA0100.1 | 8 | GGCCGTTG |
| MA0101.1 | 10 | GGGGATTTCC |
| MA0102.1 | 12 | TTTCGCAATCTT |
| MA0102.2 | 9 | TTTCGCAAT |
| MA0103.1 | 6 | CACCTG |
| MA0104.1 | 6 | CACGTG |
| MA0104.2 | 10 | CGCACGTGGC |
| MA0105.1 | 11 | GGGGATTCCCC |
| MA0106.1 | 20 | CCGGACATGCCCGGGCATGT |
| MA0107.1 | 10 | GGGAATTTCC |
| MA0108.1 | 15 | GTATAAAAGGCGGGG |
| MA0108.2 | 15 | GTATAAAAGGCGGGG |
| MA0109.1 | 10 | AACCTTATAT |
| MA0110.1 | 9 | CCAATTATT |
| MA0111.1 | 11 | AGGGTAACAGC |
| MA0112.1 | 18 | CCAGGTCACCGTGACCCC |
| MA0112.2 | 20 | GGCCCAGGTCACCCTGACCT |
| MA0113.1 | 18 | GGGAACATTATGTCCTAT |
| MA0114.1 | 13 | AGGCCAAAGGTCA |
| MA0115.1 | 17 | AAAGGTCAAAGGTCAAC |
| MA0116.1 | 15 | GGCACCCAGGGGTGC |
| MA0117.1 | 8 | GCTGACGG |
| MA0118.1 | 9 | TGGGGGTTC |
| MA0119.1 | 14 | TGGCACCATGCCAA |
| MA0120.1 | 12 | TTTTCCTTTTCG |
| MA0121.1 | 8 | AGATCCGC |
| MA0122.1 | 9 | TTAAGTGGA |
| MA0123.1 | 10 | CGGTGCCCCC |
| MA0124.1 | 7 | ATACTTA |
| MA0125.1 | 8 | TAATTGGT |
| MA0126.1 | 9 | AGTAACAGT |
| MA0127.1 | 10 | ACTTCTTATT |
| MA0128.1 | 8 | ACACGTGG |
| MA0129.1 | 7 | TACGTCA |
| MA0130.1 | 6 | ATCCAC |
| MA0131.1 | 10 | TAACGTCCGC |
| MA0132.1 | 6 | CTAATT |
| MA0133.1 | 7 | ACAACAC |
| MA0135.1 | 13 | AAATTAATTAATC |
| MA0136.1 | 9 | TACTTCCTT |
| MA0137.1 | 14 | GGAAAATGAAACTG |
| MA0137.2 | 15 | CATTTCCCGGAAACC |
| MA0138.1 | 19 | GCGCTGTCCATGGTGCTGA |
| MA0138.2 | 21 | TTCAGCACCATGGACAGCGCC |
| MA0139.1 | 19 | TGGCCACCAGGGGGCGCTA |
| MA0140.1 | 18 | CTGGTGGGGACAGATAAG |
| MA0141.1 | 12 | AGCTCAAGGTCA |
| MA0142.1 | 15 | CTTTGTTATGCAAAT |
| MA0143.1 | 15 | CCTTTGTTATGCAAA |
| MA0144.1 | 10 | TTCCAGGAAG |
| MA0145.1 | 14 | CCAGTTCAAACCAG |
| MA0146.1 | 14 | GGGGCCGAGGCCTG |
| MA0147.1 | 10 | CGCACGTGGC |
| MA0148.1 | 11 | TGTTTACTTTG |
| MA0149.1 | 18 | GGAAGGAAGGAAGGAAGG |
| MA0150.1 | 11 | ATGACTCAGCA |
| MA0151.1 | 6 | ATTAAA |
| MA0152.1 | 7 | TTTTCCA |
| MA0153.1 | 12 | TTAATATTTAAC |
| MA0154.1 | 10 | ACCCAAGGGA |
| MA0155.1 | 12 | TGTCAGGGGGCG |
| MA0156.1 | 8 | CAGGAAAT |
| MA0157.1 | 8 | TGTAAACA |
| MA0158.1 | 8 | CACTAATT |
| MA0159.1 | 17 | AGGTCATGGAGAGGTCA |
| MA0160.1 | 8 | AAGGTCAC |
| MA0161.1 | 6 | TTGGCA |
| MA0162.1 | 11 | TGCGTGGGCGT |
| MA0163.1 | 14 | GGGGCCCAAGGGGG |
| MA0164.1 | 7 | CAAGCTT |
| MA0165.1 | 7 | TTTATGA |
| MA0166.1 | 7 | TTAATGA |
| MA0167.1 | 7 | TTAATTA |
| MA0168.1 | 7 | TTAATTG |
| MA0169.1 | 7 | TTAATTG |
| MA0170.1 | 7 | TTAATTA |
| MA0171.1 | 7 | TTAATTG |
| MA0172.1 | 7 | TTAATTA |
| MA0173.1 | 7 | TTAACAT |
| MA0174.1 | 7 | TTTATTA |
| MA0175.1 | 7 | TTAATTG |
| MA0176.1 | 7 | TTAATTA |
| MA0177.1 | 7 | TTAATTA |
| MA0178.1 | 7 | TTAATTA |
| MA0179.1 | 7 | TTAATTA |
| MA0180.1 | 9 | TTTAATTAG |
| MA0181.1 | 7 | TTAATTA |
| MA0182.1 | 7 | TTTATTA |
| MA0183.1 | 8 | TTTAATTA |
| MA0184.1 | 7 | CTAATTA |
| MA0185.1 | 6 | TTCGTG |
| MA0186.1 | 7 | TTAATGA |
| MA0187.1 | 7 | TAATTAC |
| MA0188.1 | 7 | CCAATTA |
| MA0189.1 | 7 | TTAATTA |
| MA0190.1 | 6 | TAATCC |
| MA0191.1 | 7 | TTAATTA |
| MA0192.1 | 7 | TTAATTG |
| MA0193.1 | 7 | CTACCAA |
| MA0194.1 | 7 | TTAATTA |
| MA0195.1 | 7 | TTAATTA |
| MA0196.1 | 7 | TTAATTG |
| MA0197.1 | 8 | TTTAATTA |
| MA0198.1 | 7 | CTAATTA |
| MA0199.1 | 5 | TGATA |
| MA0200.1 | 7 | CTAATTA |
| MA0201.1 | 7 | TTAATCC |
| MA0202.1 | 7 | CTAATTA |
| MA0203.1 | 7 | TTAATGA |
| MA0204.1 | 6 | TGATAC |
| MA0205.1 | 10 | TTGCTCTCTC |
| MA0206.1 | 7 | TTAATTA |
| MA0207.1 | 6 | TGACAG |
| MA0208.1 | 7 | TAATTAA |
| MA0209.1 | 7 | CTAATTA |
| MA0210.1 | 5 | TAACA |
| MA0211.1 | 7 | TTAAGTG |
| MA0212.1 | 6 | TAATCC |
| MA0213.1 | 8 | CTGGCGCC |
| MA0214.1 | 7 | TTAATTG |
| MA0215.1 | 7 | TTAATGA |
| MA0216.1 | 7 | TTTATTG |
| MA0217.1 | 5 | TAACA |
| MA0218.1 | 6 | TTGAAC |
| MA0219.1 | 7 | TTAATGA |
| MA0220.1 | 7 | TTAATTA |
| MA0221.1 | 7 | CTAATGA |
| MA0222.1 | 8 | TTTTGACA |
| MA0223.1 | 7 | GTAATTA |
| MA0224.1 | 7 | GTAATTA |
| MA0225.1 | 7 | TTAATTA |
| MA0226.1 | 7 | TTAATTA |
| MA0227.1 | 6 | TGACAG |
| MA0228.1 | 7 | CTAATTA |
| MA0229.1 | 8 | TCTAATTA |
| MA0230.1 | 7 | TTAATTA |
| MA0231.1 | 6 | TAACTA |
| MA0232.1 | 6 | TAATTA |
| MA0233.1 | 5 | AAACA |
| MA0234.1 | 6 | TAATCC |
| MA0235.1 | 7 | TTGATTT |
| MA0236.1 | 7 | TTAATTA |
| MA0237.1 | 8 | CTTTGATC |
| MA0238.1 | 7 | TTAATTA |
| MA0239.1 | 9 | AGTAACAGT |
| MA0240.1 | 7 | TTAATTA |
| MA0241.1 | 7 | CTAATTA |
| MA0242.1 | 9 | TAACCGCAA |
| MA0243.1 | 12 | GACATTCCTCGA |
| MA0244.1 | 8 | ATTGCAAA |
| MA0245.1 | 7 | TTAATTA |
| MA0246.1 | 6 | TGATAC |
| MA0247.1 | 8 | CTCAAGTG |
| MA0248.1 | 7 | TTAATTG |
| MA0249.1 | 12 | TCGCATATGTTG |
| MA0250.1 | 7 | TTAATTG |
| MA0251.1 | 7 | TTAATTA |
| MA0252.1 | 6 | TGACAG |
| MA0253.1 | 9 | TTTCAAGTG |
| MA0254.1 | 6 | TATGCA |
| MA0255.1 | 10 | TTGAGTGATT |
| MA0256.1 | 7 | CTAATGA |
| MA0257.1 | 7 | TTAATTA |
| MA0258.1 | 18 | CAAGGTCACGGTGACCTG |
| MA0259.1 | 8 | GGACGTGC |
| MA0260.1 | 6 | GAAACC |
| MA0261.1 | 6 | GAACAC |
| MA0262.1 | 13 | AATGTTGCGAATT |
| MA0263.1 | 14 | ATTGGCTTCGTTAA |
| MA0264.1 | 11 | ACCACTTGAAA |
| MA0265.1 | 16 | TCGTATAAAGTGATAT |
| MA0266.1 | 7 | CTCTAGA |
| MA0267.1 | 7 | ACCAGCA |
| MA0268.1 | 7 | ACCCCAC |
| MA0269.1 | 21 | TTACATATTGCACCCGATTGG |
| MA0270.1 | 8 | CACACCCC |
| MA0271.1 | 6 | AGACGC |
| MA0272.1 | 8 | GTGACTCT |
| MA0273.1 | 21 | GATAATTCTCGGCAAGTATGT |
| MA0274.1 | 8 | ACTTGAAT |
| MA0275.1 | 6 | CCGGAA |
| MA0276.1 | 10 | CCGGATCGGG |
| MA0277.1 | 9 | AAAAAGAAA |
| MA0278.1 | 21 | GCACAGCCAGAGTCAAGTCAA |
| MA0279.1 | 10 | ATTAGTAAGC |
| MA0280.1 | 6 | CCGGAA |
| MA0281.1 | 8 | GCACGTGA |
| MA0282.1 | 8 | CTCGGAAA |
| MA0283.1 | 8 | GGCGGAGA |
| MA0284.1 | 10 | TTACGTAATC |
| MA0285.1 | 9 | CTAAGCCAC |
| MA0286.1 | 9 | ATGACGTAA |
| MA0287.1 | 11 | CAGCAAAAATG |
| MA0288.1 | 9 | TGACACATT |
| MA0289.1 | 7 | CGATAAG |
| MA0290.1 | 19 | AAAAGCCGCGGGCGGGATT |
| MA0291.1 | 9 | AATGTGCGC |
| MA0292.1 | 7 | CTCCGGA |
| MA0293.1 | 11 | AAAGATCTAAA |
| MA0294.1 | 9 | CGGAAAAAT |
| MA0295.1 | 8 | GACGCAAA |
| MA0296.1 | 20 | TGAATTGTAAACAAAGAGGA |
| MA0297.1 | 7 | GTAAACA |
| MA0298.1 | 6 | CTATCA |
| MA0299.1 | 15 | CGGGGAACAGTACTC |
| MA0300.1 | 8 | CCGATAAG |
| MA0301.1 | 9 | AGATCTACA |
| MA0302.1 | 11 | AAAGATCTAAA |
| MA0303.1 | 21 | CAAGGGATGAGTCATACTTCA |
| MA0304.1 | 8 | TGGAAGCC |
| MA0305.1 | 7 | GCTTCCT |
| MA0306.1 | 9 | ACCCCTAAA |
| MA0307.1 | 5 | GATAA |
| MA0308.1 | 21 | ATTAAAAAACTCCGGAGTATA |
| MA0309.1 | 8 | TGATAAGA |
| MA0310.1 | 8 | GACACGTG |
| MA0311.1 | 5 | CGGAA |
| MA0312.1 | 8 | CGGAGATA |
| MA0313.1 | 5 | TTGGT |
| MA0314.1 | 15 | TCTGATTGGTTCAGA |
| MA0315.1 | 15 | ACCAATCAGAGGCGA |
| MA0316.1 | 15 | TGGGATCTGATTGGT |
| MA0317.1 | 8 | ATAAACAA |
| MA0318.1 | 8 | CATGTAAT |
| MA0319.1 | 8 | ATGGAACA |
| MA0320.1 | 8 | CCGCCGAG |
| MA0321.1 | 9 | GCATGTGAA |
| MA0322.1 | 9 | GCATGTGAA |
| MA0323.1 | 15 | AAGCCGGAAGCGGGG |
| MA0324.1 | 10 | CCGTTACCGG |
| MA0325.1 | 8 | CCGGAATT |
| MA0326.1 | 8 | TTTGCTCA |
| MA0327.1 | 7 | ACACAAT |
| MA0328.1 | 9 | CATGTAATT |
| MA0329.1 | 7 | ACGCGTA |
| MA0330.1 | 7 | ACGCGTT |
| MA0331.1 | 12 | CCCAATTAGGAA |
| MA0332.1 | 6 | CTGTGG |
| MA0333.1 | 9 | AGTGTGGCG |
| MA0334.1 | 7 | CGCCACA |
| MA0335.1 | 8 | AACTGTGG |
| MA0336.1 | 21 | AGGACTATAGAACACTCTAAA |
| MA0337.1 | 7 | CCCCCGC |
| MA0338.1 | 7 | CCCCGCA |
| MA0339.1 | 7 | CCCCGCA |
| MA0340.1 | 6 | TAGGTA |
| MA0341.1 | 5 | AGGGG |
| MA0342.1 | 5 | AGGGG |
| MA0343.1 | 21 | TTTCCGGCCACAAAAACGCAA |
| MA0344.1 | 8 | GCCGGGGA |
| MA0345.1 | 21 | ATGACCTATATATAAAAATGA |
| MA0346.1 | 20 | TTTATTTATATATAATATGA |
| MA0347.1 | 20 | CTAGATCAGGGTCCATCGCA |
| MA0348.1 | 9 | TCGGAGATA |
| MA0349.1 | 7 | CGAACCG |
| MA0350.1 | 21 | AGGCACAGCTCATCGCGTTTT |
| MA0351.1 | 21 | TTCTGCACCTCATCGCATCCT |
| MA0352.1 | 8 | TCCGCGGA |
| MA0353.1 | 8 | TCCGCGGA |
| MA0354.1 | 8 | ACGGAGAT |
| MA0355.1 | 10 | ACCTGCAGCA |
| MA0356.1 | 6 | ATAATA |
| MA0357.1 | 8 | GCACGTGC |
| MA0358.1 | 8 | CCCGGGAA |
| MA0359.1 | 10 | CACCCATACA |
| MA0360.1 | 8 | TGCGGAAC |
| MA0361.1 | 7 | CGGCCGA |
| MA0362.1 | 7 | CTCGGGG |
| MA0363.1 | 9 | GTTACCCGG |
| MA0364.1 | 7 | CCCCTGA |
| MA0365.1 | 8 | GGTTGCTA |
| MA0366.1 | 5 | AGGGG |
| MA0367.1 | 11 | AATTTTTCCGG |
| MA0368.1 | 7 | CGCCAAG |
| MA0369.1 | 18 | AGTTCTATAAATAGATTC |
| MA0370.1 | 10 | TCCAAAGGAA |
| MA0371.1 | 12 | TCCATTGTTCTC |
| MA0372.1 | 8 | ACCCCTAA |
| MA0373.1 | 7 | GGTGGCG |
| MA0374.1 | 7 | CGCGCGG |
| MA0375.1 | 8 | CGCGCGCG |
| MA0376.1 | 20 | ATATTAGCACGTGCTTAGTC |
| MA0377.1 | 21 | TAGAGAATAGAAGAAATAAAA |
| MA0378.1 | 21 | ATTGAAAAAAATTTTCTACGG |
| MA0379.1 | 5 | ATATA |
| MA0380.1 | 7 | CTCCGGA |
| MA0381.1 | 6 | GGCCAT |
| MA0382.1 | 8 | ACGTAATG |
| MA0383.1 | 21 | TTACCTATAATTAAATTAGCA |
| MA0384.1 | 11 | TGGTAGCGCCG |
| MA0385.1 | 11 | ACCTGCAGGCA |
| MA0386.1 | 21 | GACTAGATATATATATTCGAT |
| MA0387.1 | 10 | AATTAAAGAA |
| MA0388.1 | 8 | GAAATCAA |
| MA0389.1 | 8 | AGATCTAC |
| MA0390.1 | 21 | GTCCAAAATTTTTCACTCTGG |
| MA0391.1 | 7 | CTCGGAA |
| MA0392.1 | 8 | CGGTGTTA |
| MA0393.1 | 7 | TGAAACA |
| MA0394.1 | 8 | TGCGGCGC |
| MA0395.1 | 20 | TGATCGGCGCCGCACGACGA |
| MA0396.1 | 9 | GCTAGCGCA |
| MA0397.1 | 9 | GATAGCGCA |
| MA0398.1 | 9 | AAAATTTTT |
| MA0399.1 | 7 | CGCGGGG |
| MA0400.1 | 20 | ATGATAAACTCCGAAAATTT |
| MA0401.1 | 8 | ACGCGAAA |
| MA0402.1 | 8 | TGCTGGTT |
| MA0403.1 | 8 | AACCCTAA |
| MA0404.1 | 8 | CGGATCCG |
| MA0405.1 | 8 | GCGGACAT |
| MA0406.1 | 8 | ACATTCCC |
| MA0407.1 | 15 | GGAAACTCTAAGAAC |
| MA0408.1 | 8 | CTGTCAAA |
| MA0409.1 | 7 | CACGTGA |
| MA0410.1 | 8 | CGGCGGGA |
| MA0411.1 | 7 | TATACGA |
| MA0412.1 | 13 | TCGGCGGCTAATT |
| MA0413.1 | 20 | AAATTCCCCCTGAATTTGTG |
| MA0414.1 | 7 | CTCGAGA |
| MA0415.1 | 20 | ATTTGCTTACGTAAGCTCGT |
| MA0416.1 | 8 | ATTACGTA |
| MA0417.1 | 6 | AAGCAT |
| MA0418.1 | 20 | GGTCTGATTACGTAAGCGAC |
| MA0419.1 | 11 | ATTAGTAAGCA |
| MA0420.1 | 8 | ACCGGAAC |
| MA0421.1 | 10 | TTTACCCGGC |
| MA0422.1 | 10 | CCGGAGATAA |
| MA0423.1 | 9 | ACCCCTATT |
| MA0424.1 | 8 | CTCCGGAA |
| MA0425.1 | 14 | ACCCCACTTTTTTA |
| MA0426.1 | 6 | TAATTG |
| MA0427.1 | 11 | AGCTCCGGAGA |
| MA0428.1 | 9 | AACGGAAAT |
| MA0429.1 | 7 | CGGCCGA |
| MA0430.1 | 8 | CCGGAGTT |
| MA0431.1 | 9 | ACCCCGCAC |
| MA0432.1 | 8 | TCGGAGAT |
| MA0433.1 | 8 | TTAATTAA |
| MA0434.1 | 9 | TGTAGATCA |
| MA0435.1 | 20 | TGAAGACGTAAATCCTTACA |
| MA0436.1 | 7 | CCCCACG |
| MA0437.1 | 9 | ATTTCTCCG |
| MA0438.1 | 8 | ACGGAAAT |
| MA0439.1 | 11 | CTTATCTCCGC |
| MA0440.1 | 15 | ACCTTAAAGGTCATG |
| MA0441.1 | 9 | TTCCCCGCA |
| MA0442.1 | 6 | CTTTGT |
| MA0443.1 | 10 | AGGGGGCGGA |
| MA0444.1 | 7 | TTAATTG |
| MA0446.1 | 11 | TGTTTGCTTAA |
| MA0447.1 | 10 | ATTACGTAAT |
| MA0448.1 | 7 | TTAATTA |
| MA0449.1 | 10 | GGCACGTGCC |
| MA0450.1 | 9 | GGGGCGTGA |
| MA0451.1 | 12 | AAACTAGAGCAC |
| MA0452.1 | 11 | CAAAAGGGTTA |
| MA0453.1 | 12 | TATGCAAATTAG |
| MA0454.1 | 11 | AACAGTAGCAG |
| MA0455.1 | 7 | CTAATTA |
| MA0456.1 | 12 | GACCCCCCGCTG |
| MA0457.1 | 7 | TTAATTA |
| MA0458.1 | 11 | TTGTTTACATT |
| MA0459.1 | 10 | AAAAGTCAAA |
| MA0460.1 | 9 | AAGGATAAT |
Random model letter frequencies
(from memechip_example_output_files/background):
A 0.256 C 0.244 G 0.244 T 0.256
| Motif | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
|---|---|---|---|---|---|---|---|
| MA0450.1 | chr5 | + | 77087386 | 77087394 | 3.37e-06 | 0.358 | GGGGCGTGA |
| MA0450.1 | chr5 | + | 104484087 | 104484095 | 6.91e-06 | 0.358 | TGGGCGTGA |
| MA0450.1 | chr8 | + | 73222366 | 73222374 | 6.91e-06 | 0.358 | TGGGCGTGA |
| MA0450.1 | chr11 | + | 87563806 | 87563814 | 6.91e-06 | 0.358 | TGGGCGTGA |
| MA0450.1 | chr11 | + | 101177070 | 101177078 | 6.91e-06 | 0.358 | TGGGCGTGA |
| MA0450.1 | chr9 | − | 44096812 | 44096820 | 1.05e-05 | 0.358 | GAGGCGTGA |
| MA0450.1 | chr1 | − | 137838458 | 137838466 | 1.77e-05 | 0.358 | AGGGCGTGA |
| MA0450.1 | chr3 | − | 100351631 | 100351639 | 1.77e-05 | 0.358 | AGGGCGTGA |
| MA0450.1 | chr4 | − | 153400910 | 153400918 | 1.77e-05 | 0.358 | AGGGCGTGA |
| MA0450.1 | chr5 | − | 17335146 | 17335154 | 1.77e-05 | 0.358 | AGGGCGTGA |
| MA0450.1 | chr5 | − | 87233128 | 87233136 | 1.77e-05 | 0.358 | AGGGCGTGA |
| MA0450.1 | chr6 | − | 57653331 | 57653339 | 1.77e-05 | 0.358 | AGGGCGTGA |
| MA0450.1 | chr6 | − | 57653561 | 57653569 | 1.77e-05 | 0.358 | AGGGCGTGA |
| MA0450.1 | chr12 | + | 112506070 | 112506078 | 1.77e-05 | 0.358 | AGGGCGTGA |
| MA0450.1 | chr13 | − | 57679402 | 57679410 | 1.77e-05 | 0.358 | AGGGCGTGA |
| MA0450.1 | chr8 | + | 73222351 | 73222359 | 2.09e-05 | 0.358 | GGGGCGTGC |
| MA0450.1 | chr9 | + | 59598234 | 59598242 | 2.09e-05 | 0.358 | GGGGCGTGC |
| MA0450.1 | chr11 | + | 60988840 | 60988848 | 2.09e-05 | 0.358 | GGGGCGTGC |
| MA0450.1 | chr19 | − | 4558682 | 4558690 | 2.09e-05 | 0.358 | GGGGCGTGC |
| MA0450.1 | chr19 | − | 8797827 | 8797835 | 2.09e-05 | 0.358 | GGGGCGTGC |
| MA0450.1 | chr5 | − | 45951820 | 45951828 | 2.43e-05 | 0.358 | GGGGCGTGT |
| MA0450.1 | chr6 | + | 144850518 | 144850526 | 2.43e-05 | 0.358 | GGGGCGTGT |
| MA0450.1 | chr7 | − | 6315746 | 6315754 | 2.43e-05 | 0.358 | GGGGCGTGT |
| MA0450.1 | chr7 | − | 6315932 | 6315940 | 2.43e-05 | 0.358 | GGGGCGTGT |
| MA0450.1 | chr12 | + | 41693490 | 41693498 | 2.43e-05 | 0.358 | GGGGCGTGT |
| MA0450.1 | chr12 | + | 80012974 | 80012982 | 2.43e-05 | 0.358 | GGGGCGTGT |
| MA0450.1 | chr1 | + | 134941764 | 134941772 | 2.75e-05 | 0.358 | GGGGCGGGA |
| MA0450.1 | chr4 | − | 118863368 | 118863376 | 2.75e-05 | 0.358 | GGGGCGGGA |
| MA0450.1 | chr5 | + | 87233106 | 87233114 | 2.75e-05 | 0.358 | GGGGCGGGA |
| MA0450.1 | chr7 | − | 6315696 | 6315704 | 2.75e-05 | 0.358 | GGGGCGGGA |
| MA0450.1 | chr7 | + | 28266781 | 28266789 | 2.75e-05 | 0.358 | GGGGCGGGA |
| MA0450.1 | chr9 | + | 59598212 | 59598220 | 2.75e-05 | 0.358 | GGGGCGGGA |
| MA0450.1 | chr9 | − | 107198874 | 107198882 | 2.75e-05 | 0.358 | GGGGCGGGA |
| MA0450.1 | chr12 | − | 85792234 | 85792242 | 2.75e-05 | 0.358 | GGGGCGGGA |
| MA0450.1 | chr12 | − | 113882732 | 113882740 | 2.75e-05 | 0.358 | GGGGCGGGA |
| MA0450.1 | chr14 | + | 63729453 | 63729461 | 2.75e-05 | 0.358 | GGGGCGGGA |
| MA0450.1 | chr15 | + | 85935992 | 85936000 | 2.75e-05 | 0.358 | GGGGCGGGA |
| MA0450.1 | chr4 | + | 106351700 | 106351708 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr5 | − | 118933726 | 118933734 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr6 | + | 144850529 | 144850537 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr7 | − | 20250779 | 20250787 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr7 | − | 26004938 | 26004946 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr8 | + | 73222378 | 73222386 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr9 | + | 21069704 | 21069712 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr9 | + | 66764131 | 66764139 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr9 | + | 108710130 | 108710138 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr11 | − | 57590823 | 57590831 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr11 | + | 117187431 | 117187439 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr12 | + | 85792406 | 85792414 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr17 | + | 12397940 | 12397948 | 3.07e-05 | 0.358 | GGGGCGTGG |
| MA0450.1 | chr3 | − | 60589250 | 60589258 | 3.41e-05 | 0.358 | TGGGCGTGC |
| MA0450.1 | chr4 | − | 118293358 | 118293366 | 3.41e-05 | 0.358 | TGGGCGTGC |
| MA0450.1 | chr1 | − | 122156001 | 122156009 | 3.76e-05 | 0.358 | TGGGCGTGT |
| MA0450.1 | chr15 | + | 36250919 | 36250927 | 3.76e-05 | 0.358 | TGGGCGTGT |
| MA0450.1 | chr3 | − | 151777921 | 151777929 | 4.1e-05 | 0.358 | TGGGCGGGA |
| MA0450.1 | chr4 | − | 44017274 | 44017282 | 4.1e-05 | 0.358 | TGGGCGGGA |
| MA0450.1 | chr8 | + | 126512578 | 126512586 | 4.1e-05 | 0.358 | TGGGCGGGA |
| MA0450.1 | chr9 | − | 107198977 | 107198985 | 4.1e-05 | 0.358 | TGGGCGGGA |
| MA0450.1 | chr11 | − | 50038247 | 50038255 | 4.1e-05 | 0.358 | TGGGCGGGA |
| MA0450.1 | chr11 | − | 104890512 | 104890520 | 4.1e-05 | 0.358 | TGGGCGGGA |
| MA0450.1 | chr14 | − | 63796725 | 63796733 | 4.1e-05 | 0.358 | TGGGCGGGA |
| MA0450.1 | chr1 | − | 173211167 | 173211175 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr2 | − | 157978584 | 157978592 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr4 | + | 153535368 | 153535376 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr7 | + | 38970426 | 38970434 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr7 | + | 103854078 | 103854086 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr8 | + | 73222590 | 73222598 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr9 | + | 21069585 | 21069593 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr9 | − | 70682771 | 70682779 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr10 | − | 41632329 | 41632337 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr11 | + | 60989092 | 60989100 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr11 | + | 115374879 | 115374887 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr11 | + | 117642327 | 117642335 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr12 | − | 78031386 | 78031394 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr12 | − | 85791959 | 85791967 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr15 | − | 83139351 | 83139359 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr17 | + | 28946364 | 28946372 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr18 | − | 13094711 | 13094719 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr18 | − | 23982762 | 23982770 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr19 | − | 45865286 | 45865294 | 4.44e-05 | 0.358 | TGGGCGTGG |
| MA0450.1 | chr2 | − | 130961608 | 130961616 | 4.81e-05 | 0.383 | AAGGCGTGA |
| MA0450.1 | chr1 | − | 36977347 | 36977355 | 5.15e-05 | 0.4 | GAGGCGTGC |
| MA0450.1 | chr13 | + | 114606063 | 114606071 | 5.15e-05 | 0.4 | GAGGCGTGC |
| MA0450.1 | chr4 | − | 117504728 | 117504736 | 5.5e-05 | 0.413 | GAGGCGTGT |
| MA0450.1 | chr9 | + | 66351938 | 66351946 | 5.5e-05 | 0.413 | GAGGCGTGT |
| MA0450.1 | chr16 | − | 91353046 | 91353054 | 5.5e-05 | 0.413 | GAGGCGTGT |
| MA0450.1 | chr11 | + | 101177190 | 101177198 | 5.84e-05 | 0.423 | GAGGCGGGA |
| MA0450.1 | chr17 | − | 87913117 | 87913125 | 5.84e-05 | 0.423 | GAGGCGGGA |
| MA0450.1 | chr19 | + | 8994838 | 8994846 | 5.84e-05 | 0.423 | GAGGCGGGA |
| MA0450.1 | chr19 | + | 5727127 | 5727135 | 6.19e-05 | 0.439 | GGGGCGTTA |
| MA0450.1 | chr19 | − | 18835720 | 18835728 | 6.19e-05 | 0.439 | GGGGCGTTA |
| MA0450.1 | chr7 | − | 135432809 | 135432817 | 6.53e-05 | 0.458 | GAGGCGTGG |
| MA0450.1 | chr5 | − | 139858393 | 139858401 | 6.89e-05 | 0.461 | TAGGCGTGC |
| MA0450.1 | chr7 | + | 56247826 | 56247834 | 6.89e-05 | 0.461 | TAGGCGTGC |
| MA0450.1 | chr4 | + | 117601395 | 117601403 | 7.26e-05 | 0.461 | TAGGCGTGT |
| MA0450.1 | chr5 | − | 121049862 | 121049870 | 7.26e-05 | 0.461 | TAGGCGTGT |
| MA0450.1 | chr9 | + | 59598589 | 59598597 | 7.26e-05 | 0.461 | TAGGCGTGT |
| MA0450.1 | chr11 | + | 117642112 | 117642120 | 7.26e-05 | 0.461 | TAGGCGTGT |
| MA0450.1 | chr4 | + | 41334965 | 41334973 | 7.59e-05 | 0.461 | AGGGCGTGC |
| MA0450.1 | chr5 | + | 96888806 | 96888814 | 7.59e-05 | 0.461 | AGGGCGTGC |
| MA0450.1 | chr7 | − | 56247807 | 56247815 | 7.59e-05 | 0.461 | AGGGCGTGC |
| MA0450.1 | chr8 | − | 24164667 | 24164675 | 7.59e-05 | 0.461 | AGGGCGTGC |
| MA0450.1 | chr9 | − | 24715266 | 24715274 | 7.59e-05 | 0.461 | AGGGCGTGC |
| MA0450.1 | chr18 | − | 60666932 | 60666940 | 7.59e-05 | 0.461 | AGGGCGTGC |
| MA0450.1 | chr1 | − | 9738506 | 9738514 | 8.3e-05 | 0.461 | AGGGCGTGT |
| MA0450.1 | chr1 | − | 88057279 | 88057287 | 8.3e-05 | 0.461 | AGGGCGTGT |
| MA0450.1 | chr5 | + | 129723570 | 129723578 | 8.3e-05 | 0.461 | AGGGCGTGT |
| MA0450.1 | chr9 | − | 114376098 | 114376106 | 8.3e-05 | 0.461 | AGGGCGTGT |
| MA0450.1 | chr10 | − | 60612628 | 60612636 | 8.3e-05 | 0.461 | AGGGCGTGT |
| MA0450.1 | chr11 | + | 4577431 | 4577439 | 8.3e-05 | 0.461 | AGGGCGTGT |
| MA0450.1 | chr11 | + | 99087796 | 99087804 | 8.3e-05 | 0.461 | AGGGCGTGT |
| MA0450.1 | chr11 | + | 116481486 | 116481494 | 8.3e-05 | 0.461 | AGGGCGTGT |
| MA0450.1 | chr12 | + | 84938334 | 84938342 | 8.3e-05 | 0.461 | TAGGCGGGA |
| MA0450.1 | chr13 | − | 45622822 | 45622830 | 8.3e-05 | 0.461 | AGGGCGTGT |
| MA0450.1 | chr15 | − | 98886792 | 98886800 | 8.3e-05 | 0.461 | TAGGCGGGA |
| MA0450.1 | chr17 | + | 47673135 | 47673143 | 8.3e-05 | 0.461 | AGGGCGTGT |
| MA0450.1 | chr1 | − | 134264197 | 134264205 | 9.01e-05 | 0.472 | AGGGCGGGA |
| MA0450.1 | chr5 | + | 97380857 | 97380865 | 9.01e-05 | 0.472 | AGGGCGGGA |
| MA0450.1 | chr6 | + | 136416935 | 136416943 | 9.01e-05 | 0.472 | AGGGCGGGA |
| MA0450.1 | chr11 | − | 69714505 | 69714513 | 9.01e-05 | 0.472 | AGGGCGGGA |
| MA0450.1 | chr14 | − | 63796736 | 63796744 | 9.01e-05 | 0.472 | AGGGCGGGA |
| MA0450.1 | chr19 | + | 55358653 | 55358661 | 9.01e-05 | 0.472 | AGGGCGGGA |
| MA0450.1 | chr7 | + | 16685384 | 16685392 | 9.37e-05 | 0.472 | TAGGCGTGG |
| MA0450.1 | chr18 | − | 32702312 | 32702320 | 9.37e-05 | 0.472 | TAGGCGTGG |
| MA0450.1 | chr1 | + | 136638953 | 136638961 | 9.67e-05 | 0.472 | GGGGCGGGC |
| MA0450.1 | chr4 | − | 34497808 | 34497816 | 9.67e-05 | 0.472 | GGGGCGGGC |
| MA0450.1 | chr4 | − | 132806727 | 132806735 | 9.67e-05 | 0.472 | GGGGCGGGC |
| MA0450.1 | chr7 | − | 29610323 | 29610331 | 9.67e-05 | 0.472 | GGGGCGGGC |
| MA0450.1 | chr8 | + | 125244389 | 125244397 | 9.67e-05 | 0.472 | GGGGCGGGC |
| MA0450.1 | chr9 | + | 44773789 | 44773797 | 9.67e-05 | 0.472 | GGGGCGGGC |
| MA0450.1 | chr10 | − | 128184999 | 128185007 | 9.67e-05 | 0.472 | GGGGCGGGC |
| MA0450.1 | chr12 | − | 90222637 | 90222645 | 9.67e-05 | 0.472 | GGGGCGGGC |
Command line:
/home/james/reldist/BUILD/bin/fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_3 --bgfile memechip_example_output_files/background --motif MA0450.1 JASPAR_CORE_2009.meme memechip_example_output_files/sample-dna-Klf1.fa
Settings:
| output directory = memechip_example_output_files/fimo_out_3 | MEME file name = JASPAR_CORE_2009.meme | sequence file name = memechip_example_output_files/sample-dna-Klf1.fa |
| background file name = memechip_example_output_files/background | allow clobber = true | compute q-values = true |
| parse genomic coord. = true | text only = false | scan both strands = true |
| max sequence length = 250000000 | output threshold = 0.0001 | threshold type = p-value |
| max stored scores = 100000 | pseudocount = 0.1 | verbosity = 1 |
| selected motif = MA0450.1 |
This information can be useful in the event you wish to report a problem with the FIMO software.