| Database and Motifs | High-scoring Motif Occurrences | Debugging Information |
FIMO version 4.10.0, (Release date: Wed May 21 10:35:36 2014 +1000)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE
memechip_example_output_files/sample-dna-Klf1.fa
Database contains
904
sequences,
452000
residues
MOTIFS JASPAR_CORE_2009.meme (nucleotide)
| MOTIF | WIDTH | BEST POSSIBLE MATCH |
|---|---|---|
| MA0001.1 | 10 | CCATAAATAG |
| MA0002.1 | 11 | TATTGTGGTTA |
| MA0002.2 | 11 | GTCTGTGGTTT |
| MA0003.1 | 9 | GCCCGGGGG |
| MA0004.1 | 6 | CACGTG |
| MA0005.1 | 11 | CCAAATTTGGT |
| MA0006.1 | 6 | TGCGTG |
| MA0007.1 | 22 | ATAAGAACATCGTGTACCCGCC |
| MA0008.1 | 8 | CAATTATT |
| MA0009.1 | 11 | CTAGGTGTGAA |
| MA0010.1 | 14 | GTAATAAACAAATC |
| MA0011.1 | 8 | TACTATTT |
| MA0012.1 | 11 | TAAACTAAAAG |
| MA0013.1 | 11 | TAGTAAACAAA |
| MA0014.1 | 20 | AGAGCACTGAAGCGTAACGG |
| MA0015.1 | 10 | GTATATATAC |
| MA0016.1 | 10 | GGGGTCACGG |
| MA0017.1 | 14 | TGACCTTTGAACCT |
| MA0018.1 | 12 | CCTGGTGACGTC |
| MA0018.2 | 8 | TGACGTCA |
| MA0019.1 | 12 | AGATGCAATCCC |
| MA0020.1 | 6 | AAAGCA |
| MA0021.1 | 6 | AAAGCG |
| MA0022.1 | 12 | GGGGTTTTTCCG |
| MA0023.1 | 10 | GGGGTTTTCC |
| MA0024.1 | 8 | TTTGGCGC |
| MA0025.1 | 11 | TTATGTAACAT |
| MA0026.1 | 7 | CCGGAAG |
| MA0027.1 | 11 | AAGTAGTGTTC |
| MA0028.1 | 10 | GAGCCGGAAG |
| MA0029.1 | 14 | AAGATAAGATAATA |
| MA0030.1 | 14 | CAAACGTAAACAAT |
| MA0031.1 | 8 | GTAAACAT |
| MA0032.1 | 8 | GGTAAGTA |
| MA0033.1 | 8 | TATACATA |
| MA0034.1 | 10 | GACAACCGCC |
| MA0035.1 | 6 | GGATGG |
| MA0035.2 | 11 | ACAGATAAGAA |
| MA0036.1 | 5 | GGATA |
| MA0037.1 | 6 | AGATAG |
| MA0038.1 | 10 | CAAATCACTG |
| MA0039.1 | 10 | TAAAGGAAGG |
| MA0039.2 | 10 | TGGGTGGGGC |
| MA0040.1 | 11 | TATTGTTTATT |
| MA0041.1 | 12 | GAATGTTTGTTT |
| MA0042.1 | 12 | GGATGTTTGTTT |
| MA0043.1 | 12 | GGTTACGTAATT |
| MA0044.1 | 9 | GTTGTATTC |
| MA00445.1 | 11 | TCCATTGTTCT |
| MA0045.1 | 16 | CAACAAATGGAAAAAC |
| MA0046.1 | 14 | GGTTAATAATTAAC |
| MA0047.1 | 12 | CAATATTTACTT |
| MA0047.2 | 12 | TGTTTACTTAGG |
| MA0048.1 | 12 | GCGCAGCTGCGT |
| MA0049.1 | 10 | GCATAAAAAA |
| MA0050.1 | 12 | GAAAGTGAAACC |
| MA0051.1 | 18 | GGAAAGTGAAAGCAAAAC |
| MA0052.1 | 10 | CTATTTATAG |
| MA0053.1 | 5 | AAAGC |
| MA0054.1 | 9 | TAACCGTTT |
| MA0055.1 | 12 | CAGCAGCTGCTG |
| MA0056.1 | 6 | TGGGGA |
| MA0057.1 | 10 | GTAGGGGGAA |
| MA0058.1 | 10 | AACCACGTGA |
| MA0059.1 | 11 | GAGCACGTGGT |
| MA0060.1 | 16 | CTCAGCCAATCAGCGC |
| MA0061.1 | 10 | GGGAATTTCC |
| MA0062.1 | 10 | ACCGGAAGAG |
| MA0062.2 | 11 | CCGGAAGTGGC |
| MA0063.1 | 7 | TTAATTG |
| MA0064.1 | 5 | AAAGC |
| MA0065.1 | 20 | TTAGGGGTCAAAGGTCATCT |
| MA0065.2 | 15 | GTAGGGCAAAGGTCA |
| MA0066.1 | 20 | GTAGGTCACGGTGACCTACT |
| MA0067.1 | 8 | AGTCACGG |
| MA0068.1 | 30 | GAAAAATTTCCAATACTCCACTCCCCCCCC |
| MA0069.1 | 14 | TTCACGCATGAGTT |
| MA0070.1 | 12 | CCATCAATCAAA |
| MA0071.1 | 10 | ATCAAGGTCA |
| MA0072.1 | 14 | TATAAGTAGGTCAA |
| MA0073.1 | 20 | CCCCAAACCACCCCCCCCCA |
| MA0074.1 | 15 | GGGTCATCGAGTTCA |
| MA0075.1 | 5 | AATTA |
| MA0076.1 | 9 | ACCGGAAGT |
| MA0077.1 | 9 | GAACAATGG |
| MA0078.1 | 9 | TTCATTGTC |
| MA0079.1 | 10 | GGGGCGGGGT |
| MA0079.2 | 10 | CCCCGCCCCC |
| MA0080.1 | 6 | CGGAAG |
| MA0080.2 | 7 | AGGAAGT |
| MA0081.1 | 7 | AGAGGAA |
| MA0082.1 | 14 | CCAAAAATGGAAAT |
| MA0083.1 | 12 | GCCCATATATGG |
| MA0084.1 | 9 | GTAAACAAT |
| MA0085.1 | 16 | TTGTGGGAAACGAGAT |
| MA0086.1 | 6 | CAGGTG |
| MA0087.1 | 7 | TAACAAT |
| MA0088.1 | 20 | GATTTCCCATAATGCCTTGC |
| MA0089.1 | 6 | CATGAC |
| MA0090.1 | 12 | CACATTCCTCCG |
| MA0091.1 | 12 | CGACCATCTGTT |
| MA0092.1 | 10 | GGTCTGGCAT |
| MA0093.1 | 7 | CACGTGG |
| MA0094.1 | 4 | TAAT |
| MA0094.2 | 8 | TTTAATTA |
| MA0095.1 | 6 | GCCATC |
| MA0096.1 | 7 | ATGACGT |
| MA0097.1 | 12 | GATGACGTGGCC |
| MA0098.1 | 6 | TTTCCG |
| MA0099.1 | 8 | GTGAGTCA |
| MA0099.2 | 7 | TGACTCA |
| MA0100.1 | 8 | GGCCGTTG |
| MA0101.1 | 10 | GGGGATTTCC |
| MA0102.1 | 12 | TTTCGCAATCTT |
| MA0102.2 | 9 | TTTCGCAAT |
| MA0103.1 | 6 | CACCTG |
| MA0104.1 | 6 | CACGTG |
| MA0104.2 | 10 | CGCACGTGGC |
| MA0105.1 | 11 | GGGGATTCCCC |
| MA0106.1 | 20 | CCGGACATGCCCGGGCATGT |
| MA0107.1 | 10 | GGGAATTTCC |
| MA0108.1 | 15 | GTATAAAAGGCGGGG |
| MA0108.2 | 15 | GTATAAAAGGCGGGG |
| MA0109.1 | 10 | AACCTTATAT |
| MA0110.1 | 9 | CCAATTATT |
| MA0111.1 | 11 | AGGGTAACAGC |
| MA0112.1 | 18 | CCAGGTCACCGTGACCCC |
| MA0112.2 | 20 | GGCCCAGGTCACCCTGACCT |
| MA0113.1 | 18 | GGGAACATTATGTCCTAT |
| MA0114.1 | 13 | AGGCCAAAGGTCA |
| MA0115.1 | 17 | AAAGGTCAAAGGTCAAC |
| MA0116.1 | 15 | GGCACCCAGGGGTGC |
| MA0117.1 | 8 | GCTGACGG |
| MA0118.1 | 9 | TGGGGGTTC |
| MA0119.1 | 14 | TGGCACCATGCCAA |
| MA0120.1 | 12 | TTTTCCTTTTCG |
| MA0121.1 | 8 | AGATCCGC |
| MA0122.1 | 9 | TTAAGTGGA |
| MA0123.1 | 10 | CGGTGCCCCC |
| MA0124.1 | 7 | ATACTTA |
| MA0125.1 | 8 | TAATTGGT |
| MA0126.1 | 9 | AGTAACAGT |
| MA0127.1 | 10 | ACTTCTTATT |
| MA0128.1 | 8 | ACACGTGG |
| MA0129.1 | 7 | TACGTCA |
| MA0130.1 | 6 | ATCCAC |
| MA0131.1 | 10 | TAACGTCCGC |
| MA0132.1 | 6 | CTAATT |
| MA0133.1 | 7 | ACAACAC |
| MA0135.1 | 13 | AAATTAATTAATC |
| MA0136.1 | 9 | TACTTCCTT |
| MA0137.1 | 14 | GGAAAATGAAACTG |
| MA0137.2 | 15 | CATTTCCCGGAAACC |
| MA0138.1 | 19 | GCGCTGTCCATGGTGCTGA |
| MA0138.2 | 21 | TTCAGCACCATGGACAGCGCC |
| MA0139.1 | 19 | TGGCCACCAGGGGGCGCTA |
| MA0140.1 | 18 | CTGGTGGGGACAGATAAG |
| MA0141.1 | 12 | AGCTCAAGGTCA |
| MA0142.1 | 15 | CTTTGTTATGCAAAT |
| MA0143.1 | 15 | CCTTTGTTATGCAAA |
| MA0144.1 | 10 | TTCCAGGAAG |
| MA0145.1 | 14 | CCAGTTCAAACCAG |
| MA0146.1 | 14 | GGGGCCGAGGCCTG |
| MA0147.1 | 10 | CGCACGTGGC |
| MA0148.1 | 11 | TGTTTACTTTG |
| MA0149.1 | 18 | GGAAGGAAGGAAGGAAGG |
| MA0150.1 | 11 | ATGACTCAGCA |
| MA0151.1 | 6 | ATTAAA |
| MA0152.1 | 7 | TTTTCCA |
| MA0153.1 | 12 | TTAATATTTAAC |
| MA0154.1 | 10 | ACCCAAGGGA |
| MA0155.1 | 12 | TGTCAGGGGGCG |
| MA0156.1 | 8 | CAGGAAAT |
| MA0157.1 | 8 | TGTAAACA |
| MA0158.1 | 8 | CACTAATT |
| MA0159.1 | 17 | AGGTCATGGAGAGGTCA |
| MA0160.1 | 8 | AAGGTCAC |
| MA0161.1 | 6 | TTGGCA |
| MA0162.1 | 11 | TGCGTGGGCGT |
| MA0163.1 | 14 | GGGGCCCAAGGGGG |
| MA0164.1 | 7 | CAAGCTT |
| MA0165.1 | 7 | TTTATGA |
| MA0166.1 | 7 | TTAATGA |
| MA0167.1 | 7 | TTAATTA |
| MA0168.1 | 7 | TTAATTG |
| MA0169.1 | 7 | TTAATTG |
| MA0170.1 | 7 | TTAATTA |
| MA0171.1 | 7 | TTAATTG |
| MA0172.1 | 7 | TTAATTA |
| MA0173.1 | 7 | TTAACAT |
| MA0174.1 | 7 | TTTATTA |
| MA0175.1 | 7 | TTAATTG |
| MA0176.1 | 7 | TTAATTA |
| MA0177.1 | 7 | TTAATTA |
| MA0178.1 | 7 | TTAATTA |
| MA0179.1 | 7 | TTAATTA |
| MA0180.1 | 9 | TTTAATTAG |
| MA0181.1 | 7 | TTAATTA |
| MA0182.1 | 7 | TTTATTA |
| MA0183.1 | 8 | TTTAATTA |
| MA0184.1 | 7 | CTAATTA |
| MA0185.1 | 6 | TTCGTG |
| MA0186.1 | 7 | TTAATGA |
| MA0187.1 | 7 | TAATTAC |
| MA0188.1 | 7 | CCAATTA |
| MA0189.1 | 7 | TTAATTA |
| MA0190.1 | 6 | TAATCC |
| MA0191.1 | 7 | TTAATTA |
| MA0192.1 | 7 | TTAATTG |
| MA0193.1 | 7 | CTACCAA |
| MA0194.1 | 7 | TTAATTA |
| MA0195.1 | 7 | TTAATTA |
| MA0196.1 | 7 | TTAATTG |
| MA0197.1 | 8 | TTTAATTA |
| MA0198.1 | 7 | CTAATTA |
| MA0199.1 | 5 | TGATA |
| MA0200.1 | 7 | CTAATTA |
| MA0201.1 | 7 | TTAATCC |
| MA0202.1 | 7 | CTAATTA |
| MA0203.1 | 7 | TTAATGA |
| MA0204.1 | 6 | TGATAC |
| MA0205.1 | 10 | TTGCTCTCTC |
| MA0206.1 | 7 | TTAATTA |
| MA0207.1 | 6 | TGACAG |
| MA0208.1 | 7 | TAATTAA |
| MA0209.1 | 7 | CTAATTA |
| MA0210.1 | 5 | TAACA |
| MA0211.1 | 7 | TTAAGTG |
| MA0212.1 | 6 | TAATCC |
| MA0213.1 | 8 | CTGGCGCC |
| MA0214.1 | 7 | TTAATTG |
| MA0215.1 | 7 | TTAATGA |
| MA0216.1 | 7 | TTTATTG |
| MA0217.1 | 5 | TAACA |
| MA0218.1 | 6 | TTGAAC |
| MA0219.1 | 7 | TTAATGA |
| MA0220.1 | 7 | TTAATTA |
| MA0221.1 | 7 | CTAATGA |
| MA0222.1 | 8 | TTTTGACA |
| MA0223.1 | 7 | GTAATTA |
| MA0224.1 | 7 | GTAATTA |
| MA0225.1 | 7 | TTAATTA |
| MA0226.1 | 7 | TTAATTA |
| MA0227.1 | 6 | TGACAG |
| MA0228.1 | 7 | CTAATTA |
| MA0229.1 | 8 | TCTAATTA |
| MA0230.1 | 7 | TTAATTA |
| MA0231.1 | 6 | TAACTA |
| MA0232.1 | 6 | TAATTA |
| MA0233.1 | 5 | AAACA |
| MA0234.1 | 6 | TAATCC |
| MA0235.1 | 7 | TTGATTT |
| MA0236.1 | 7 | TTAATTA |
| MA0237.1 | 8 | CTTTGATC |
| MA0238.1 | 7 | TTAATTA |
| MA0239.1 | 9 | AGTAACAGT |
| MA0240.1 | 7 | TTAATTA |
| MA0241.1 | 7 | CTAATTA |
| MA0242.1 | 9 | TAACCGCAA |
| MA0243.1 | 12 | GACATTCCTCGA |
| MA0244.1 | 8 | ATTGCAAA |
| MA0245.1 | 7 | TTAATTA |
| MA0246.1 | 6 | TGATAC |
| MA0247.1 | 8 | CTCAAGTG |
| MA0248.1 | 7 | TTAATTG |
| MA0249.1 | 12 | TCGCATATGTTG |
| MA0250.1 | 7 | TTAATTG |
| MA0251.1 | 7 | TTAATTA |
| MA0252.1 | 6 | TGACAG |
| MA0253.1 | 9 | TTTCAAGTG |
| MA0254.1 | 6 | TATGCA |
| MA0255.1 | 10 | TTGAGTGATT |
| MA0256.1 | 7 | CTAATGA |
| MA0257.1 | 7 | TTAATTA |
| MA0258.1 | 18 | CAAGGTCACGGTGACCTG |
| MA0259.1 | 8 | GGACGTGC |
| MA0260.1 | 6 | GAAACC |
| MA0261.1 | 6 | GAACAC |
| MA0262.1 | 13 | AATGTTGCGAATT |
| MA0263.1 | 14 | ATTGGCTTCGTTAA |
| MA0264.1 | 11 | ACCACTTGAAA |
| MA0265.1 | 16 | TCGTATAAAGTGATAT |
| MA0266.1 | 7 | CTCTAGA |
| MA0267.1 | 7 | ACCAGCA |
| MA0268.1 | 7 | ACCCCAC |
| MA0269.1 | 21 | TTACATATTGCACCCGATTGG |
| MA0270.1 | 8 | CACACCCC |
| MA0271.1 | 6 | AGACGC |
| MA0272.1 | 8 | GTGACTCT |
| MA0273.1 | 21 | GATAATTCTCGGCAAGTATGT |
| MA0274.1 | 8 | ACTTGAAT |
| MA0275.1 | 6 | CCGGAA |
| MA0276.1 | 10 | CCGGATCGGG |
| MA0277.1 | 9 | AAAAAGAAA |
| MA0278.1 | 21 | GCACAGCCAGAGTCAAGTCAA |
| MA0279.1 | 10 | ATTAGTAAGC |
| MA0280.1 | 6 | CCGGAA |
| MA0281.1 | 8 | GCACGTGA |
| MA0282.1 | 8 | CTCGGAAA |
| MA0283.1 | 8 | GGCGGAGA |
| MA0284.1 | 10 | TTACGTAATC |
| MA0285.1 | 9 | CTAAGCCAC |
| MA0286.1 | 9 | ATGACGTAA |
| MA0287.1 | 11 | CAGCAAAAATG |
| MA0288.1 | 9 | TGACACATT |
| MA0289.1 | 7 | CGATAAG |
| MA0290.1 | 19 | AAAAGCCGCGGGCGGGATT |
| MA0291.1 | 9 | AATGTGCGC |
| MA0292.1 | 7 | CTCCGGA |
| MA0293.1 | 11 | AAAGATCTAAA |
| MA0294.1 | 9 | CGGAAAAAT |
| MA0295.1 | 8 | GACGCAAA |
| MA0296.1 | 20 | TGAATTGTAAACAAAGAGGA |
| MA0297.1 | 7 | GTAAACA |
| MA0298.1 | 6 | CTATCA |
| MA0299.1 | 15 | CGGGGAACAGTACTC |
| MA0300.1 | 8 | CCGATAAG |
| MA0301.1 | 9 | AGATCTACA |
| MA0302.1 | 11 | AAAGATCTAAA |
| MA0303.1 | 21 | CAAGGGATGAGTCATACTTCA |
| MA0304.1 | 8 | TGGAAGCC |
| MA0305.1 | 7 | GCTTCCT |
| MA0306.1 | 9 | ACCCCTAAA |
| MA0307.1 | 5 | GATAA |
| MA0308.1 | 21 | ATTAAAAAACTCCGGAGTATA |
| MA0309.1 | 8 | TGATAAGA |
| MA0310.1 | 8 | GACACGTG |
| MA0311.1 | 5 | CGGAA |
| MA0312.1 | 8 | CGGAGATA |
| MA0313.1 | 5 | TTGGT |
| MA0314.1 | 15 | TCTGATTGGTTCAGA |
| MA0315.1 | 15 | ACCAATCAGAGGCGA |
| MA0316.1 | 15 | TGGGATCTGATTGGT |
| MA0317.1 | 8 | ATAAACAA |
| MA0318.1 | 8 | CATGTAAT |
| MA0319.1 | 8 | ATGGAACA |
| MA0320.1 | 8 | CCGCCGAG |
| MA0321.1 | 9 | GCATGTGAA |
| MA0322.1 | 9 | GCATGTGAA |
| MA0323.1 | 15 | AAGCCGGAAGCGGGG |
| MA0324.1 | 10 | CCGTTACCGG |
| MA0325.1 | 8 | CCGGAATT |
| MA0326.1 | 8 | TTTGCTCA |
| MA0327.1 | 7 | ACACAAT |
| MA0328.1 | 9 | CATGTAATT |
| MA0329.1 | 7 | ACGCGTA |
| MA0330.1 | 7 | ACGCGTT |
| MA0331.1 | 12 | CCCAATTAGGAA |
| MA0332.1 | 6 | CTGTGG |
| MA0333.1 | 9 | AGTGTGGCG |
| MA0334.1 | 7 | CGCCACA |
| MA0335.1 | 8 | AACTGTGG |
| MA0336.1 | 21 | AGGACTATAGAACACTCTAAA |
| MA0337.1 | 7 | CCCCCGC |
| MA0338.1 | 7 | CCCCGCA |
| MA0339.1 | 7 | CCCCGCA |
| MA0340.1 | 6 | TAGGTA |
| MA0341.1 | 5 | AGGGG |
| MA0342.1 | 5 | AGGGG |
| MA0343.1 | 21 | TTTCCGGCCACAAAAACGCAA |
| MA0344.1 | 8 | GCCGGGGA |
| MA0345.1 | 21 | ATGACCTATATATAAAAATGA |
| MA0346.1 | 20 | TTTATTTATATATAATATGA |
| MA0347.1 | 20 | CTAGATCAGGGTCCATCGCA |
| MA0348.1 | 9 | TCGGAGATA |
| MA0349.1 | 7 | CGAACCG |
| MA0350.1 | 21 | AGGCACAGCTCATCGCGTTTT |
| MA0351.1 | 21 | TTCTGCACCTCATCGCATCCT |
| MA0352.1 | 8 | TCCGCGGA |
| MA0353.1 | 8 | TCCGCGGA |
| MA0354.1 | 8 | ACGGAGAT |
| MA0355.1 | 10 | ACCTGCAGCA |
| MA0356.1 | 6 | ATAATA |
| MA0357.1 | 8 | GCACGTGC |
| MA0358.1 | 8 | CCCGGGAA |
| MA0359.1 | 10 | CACCCATACA |
| MA0360.1 | 8 | TGCGGAAC |
| MA0361.1 | 7 | CGGCCGA |
| MA0362.1 | 7 | CTCGGGG |
| MA0363.1 | 9 | GTTACCCGG |
| MA0364.1 | 7 | CCCCTGA |
| MA0365.1 | 8 | GGTTGCTA |
| MA0366.1 | 5 | AGGGG |
| MA0367.1 | 11 | AATTTTTCCGG |
| MA0368.1 | 7 | CGCCAAG |
| MA0369.1 | 18 | AGTTCTATAAATAGATTC |
| MA0370.1 | 10 | TCCAAAGGAA |
| MA0371.1 | 12 | TCCATTGTTCTC |
| MA0372.1 | 8 | ACCCCTAA |
| MA0373.1 | 7 | GGTGGCG |
| MA0374.1 | 7 | CGCGCGG |
| MA0375.1 | 8 | CGCGCGCG |
| MA0376.1 | 20 | ATATTAGCACGTGCTTAGTC |
| MA0377.1 | 21 | TAGAGAATAGAAGAAATAAAA |
| MA0378.1 | 21 | ATTGAAAAAAATTTTCTACGG |
| MA0379.1 | 5 | ATATA |
| MA0380.1 | 7 | CTCCGGA |
| MA0381.1 | 6 | GGCCAT |
| MA0382.1 | 8 | ACGTAATG |
| MA0383.1 | 21 | TTACCTATAATTAAATTAGCA |
| MA0384.1 | 11 | TGGTAGCGCCG |
| MA0385.1 | 11 | ACCTGCAGGCA |
| MA0386.1 | 21 | GACTAGATATATATATTCGAT |
| MA0387.1 | 10 | AATTAAAGAA |
| MA0388.1 | 8 | GAAATCAA |
| MA0389.1 | 8 | AGATCTAC |
| MA0390.1 | 21 | GTCCAAAATTTTTCACTCTGG |
| MA0391.1 | 7 | CTCGGAA |
| MA0392.1 | 8 | CGGTGTTA |
| MA0393.1 | 7 | TGAAACA |
| MA0394.1 | 8 | TGCGGCGC |
| MA0395.1 | 20 | TGATCGGCGCCGCACGACGA |
| MA0396.1 | 9 | GCTAGCGCA |
| MA0397.1 | 9 | GATAGCGCA |
| MA0398.1 | 9 | AAAATTTTT |
| MA0399.1 | 7 | CGCGGGG |
| MA0400.1 | 20 | ATGATAAACTCCGAAAATTT |
| MA0401.1 | 8 | ACGCGAAA |
| MA0402.1 | 8 | TGCTGGTT |
| MA0403.1 | 8 | AACCCTAA |
| MA0404.1 | 8 | CGGATCCG |
| MA0405.1 | 8 | GCGGACAT |
| MA0406.1 | 8 | ACATTCCC |
| MA0407.1 | 15 | GGAAACTCTAAGAAC |
| MA0408.1 | 8 | CTGTCAAA |
| MA0409.1 | 7 | CACGTGA |
| MA0410.1 | 8 | CGGCGGGA |
| MA0411.1 | 7 | TATACGA |
| MA0412.1 | 13 | TCGGCGGCTAATT |
| MA0413.1 | 20 | AAATTCCCCCTGAATTTGTG |
| MA0414.1 | 7 | CTCGAGA |
| MA0415.1 | 20 | ATTTGCTTACGTAAGCTCGT |
| MA0416.1 | 8 | ATTACGTA |
| MA0417.1 | 6 | AAGCAT |
| MA0418.1 | 20 | GGTCTGATTACGTAAGCGAC |
| MA0419.1 | 11 | ATTAGTAAGCA |
| MA0420.1 | 8 | ACCGGAAC |
| MA0421.1 | 10 | TTTACCCGGC |
| MA0422.1 | 10 | CCGGAGATAA |
| MA0423.1 | 9 | ACCCCTATT |
| MA0424.1 | 8 | CTCCGGAA |
| MA0425.1 | 14 | ACCCCACTTTTTTA |
| MA0426.1 | 6 | TAATTG |
| MA0427.1 | 11 | AGCTCCGGAGA |
| MA0428.1 | 9 | AACGGAAAT |
| MA0429.1 | 7 | CGGCCGA |
| MA0430.1 | 8 | CCGGAGTT |
| MA0431.1 | 9 | ACCCCGCAC |
| MA0432.1 | 8 | TCGGAGAT |
| MA0433.1 | 8 | TTAATTAA |
| MA0434.1 | 9 | TGTAGATCA |
| MA0435.1 | 20 | TGAAGACGTAAATCCTTACA |
| MA0436.1 | 7 | CCCCACG |
| MA0437.1 | 9 | ATTTCTCCG |
| MA0438.1 | 8 | ACGGAAAT |
| MA0439.1 | 11 | CTTATCTCCGC |
| MA0440.1 | 15 | ACCTTAAAGGTCATG |
| MA0441.1 | 9 | TTCCCCGCA |
| MA0442.1 | 6 | CTTTGT |
| MA0443.1 | 10 | AGGGGGCGGA |
| MA0444.1 | 7 | TTAATTG |
| MA0446.1 | 11 | TGTTTGCTTAA |
| MA0447.1 | 10 | ATTACGTAAT |
| MA0448.1 | 7 | TTAATTA |
| MA0449.1 | 10 | GGCACGTGCC |
| MA0450.1 | 9 | GGGGCGTGA |
| MA0451.1 | 12 | AAACTAGAGCAC |
| MA0452.1 | 11 | CAAAAGGGTTA |
| MA0453.1 | 12 | TATGCAAATTAG |
| MA0454.1 | 11 | AACAGTAGCAG |
| MA0455.1 | 7 | CTAATTA |
| MA0456.1 | 12 | GACCCCCCGCTG |
| MA0457.1 | 7 | TTAATTA |
| MA0458.1 | 11 | TTGTTTACATT |
| MA0459.1 | 10 | AAAAGTCAAA |
| MA0460.1 | 9 | AAGGATAAT |
Random model letter frequencies
(from memechip_example_output_files/background):
A 0.256 C 0.244 G 0.244 T 0.256
| Motif | Sequence Name | Strand | Start | End | p-value | Matched Sequence |
|---|
Command line:
/home/james/reldist/BUILD/bin/fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_4 --bgfile memechip_example_output_files/background --motif MA0036.1 JASPAR_CORE_2009.meme memechip_example_output_files/sample-dna-Klf1.fa
Settings:
| output directory = memechip_example_output_files/fimo_out_4 | MEME file name = JASPAR_CORE_2009.meme | sequence file name = memechip_example_output_files/sample-dna-Klf1.fa |
| background file name = memechip_example_output_files/background | allow clobber = true | compute q-values = true |
| parse genomic coord. = true | text only = false | scan both strands = true |
| max sequence length = 250000000 | output threshold = 0.0001 | threshold type = p-value |
| max stored scores = 100000 | pseudocount = 0.1 | verbosity = 1 |
| selected motif = MA0036.1 |
This information can be useful in the event you wish to report a problem with the FIMO software.