Legend:
required parameter
advanced parameter
+BaselineFilterRemoves the baseline from profile spectra using a top-hat filter.
version1.10.0
Version of the tool that generated this parameters file.
++1Instance '1' section for 'BaselineFilter'
in
input raw data file input file*.mzML
out
output raw data file output file*.mzML
struc_elem_length3
Length of the structuring element (should be wider than maximal peak width - see documentation).
struc_elem_unitThomson
Unit of 'struc_elem_length' parameter.Thomson,DataPoints
methodtophat
The name of the morphological filter to be applied. If you are unsure, use the default.identity,erosion,dilation,opening,closing,gradient,tophat,bothat,erosion_simple,dilation_simple
log
Name of log file (created only when specified)
debug0
Sets the debug level
threads1
Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse
Disables progress logging to command linetrue,false
testfalse
Enables the test mode (needed for internal use only)true,false