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required parameter

advanced parameter

+FeatureFinderMRMDetects two-dimensional features in LC-MS data.

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'FeatureFinderMRM'

in input fileinput file*.mzML

out output fileoutput file*.featureXML

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false

+++algorithmAlgorithm section

min_rt_distance10 Minimal distance of MRM features in seconds.0:∞

min_num_peaks_per_feature5 Minimal number of peaks which are needed for a single feature1:∞

min_signal_to_noise_ratio2 Minimal S/N ratio a peak must have to be taken into account. Set to zero if the MRM-traces contains mostly signals, and no noise.0:∞

write_debug_filesfalse If set to true, for each feature a plot will be created, in the subdirectory 'debug'true,false

resample_tracesfalse If set to true, each trace, which is in this case a part of the MRM monitoring trace with signal is resampled, using the minimal distance of two data points in RT dimensiontrue,false

write_debuginfofalse If set to true, debug messages are written, the output can be somewhat lengthy.true,false