Legend:
required parameter
advanced parameter
+FeatureLinkerLabeledGroups corresponding isotope-labeled features in a feature map.
version1.10.0
Version of the tool that generated this parameters file.
++1Instance '1' section for 'FeatureLinkerLabeled'
in
Input fileinput file*.featureXML
out
Output fileoutput file*.consensusXML
log
Name of log file (created only when specified)
debug0
Sets the debug level
threads1
Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse
Disables progress logging to command linetrue,false
testfalse
Enables the test mode (needed for internal use only)true,false
+++algorithmAlgorithm parameters section
rt_estimatetrue
If 'true' the optimal RT pair distance and deviation are estimated by fitting a gaussian distribution to the histogram of pair distance. Note that this works only datasets with a significant amount of pairs! If 'false' the parameters 'rt_pair_dist', 'rt_dev_low' and 'rt_dev_high' define the optimal distance.true,false
rt_pair_dist-20
optimal pair distance in RT [sec] from light to heavy feature
rt_dev_low15
maximum allowed deviation below optimal retention time distance0:∞
rt_dev_high15
maximum allowed deviation above optimal retention time distance0:∞
mz_pair_dists[4]
optimal pair distances in m/z [Th] for features with charge +1 (adapted to +2, +3, .. by division through charge)
mz_dev0.05
maximum allowed deviation from optimal m/z distance
0:∞
mrmfalse
this option should be used if the features correspond mrm chromatograms (additionally the precursor is taken into account)true,false