Legend:
required parameter
advanced parameter
+FeatureLinkerUnlabeledQTGroups corresponding features from multiple maps.
version1.10.0
Version of the tool that generated this parameters file.
++1Instance '1' section for 'FeatureLinkerUnlabeledQT'
in[]
input files separated by blanksinput file*.featureXML,*.consensusXML
out
Output fileoutput file*.consensusXML
keep_subelementsfalse
For consensusXML input only: If set, the sub-features of the inputs are transferred to the output.true,false
log
Name of log file (created only when specified)
debug0
Sets the debug level
threads1
Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse
Disables progress logging to command linetrue,false
testfalse
Enables the test mode (needed for internal use only)true,false
+++algorithmAlgorithm parameters section
use_identificationsfalse
Never link features that are annotated with different peptides (only the best hit per peptide identification is taken into account).true,false
ignore_chargefalse
Compare features normally even if their charge states are differenttrue,false
++++distance_RTDistance component based on RT differences
max_difference100
Maximum allowed difference in RT in seconds0:∞
exponent1
Normalized RT differences are raised to this power (using 1 or 2 will be fast, everything else is REALLY slow)0:∞
weight1
RT distances are weighted by this factor0:∞
++++distance_MZDistance component based on m/z differences
max_difference0.3
Maximum allowed difference in m/z (unit defined by 'unit')0:∞
unitDa
Unit of the 'max_difference' parameterDa,ppm
exponent2
Normalized m/z differences are raised to this power (using 1 or 2 will be fast, everything else is REALLY slow)0:∞
weight1
m/z distances are weighted by this factor0:∞
++++distance_intensityDistance component based on differences in relative intensity
exponent1
Differences in relative intensity are raised to this power (using 1 or 2 will be fast, everything else is REALLY slow)0:∞
weight0
Distances based on relative intensity are weighted by this factor0:∞