Legend:

required parameter

advanced parameter

+FileInfoShows basic information about the file, such as data ranges and file type.

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'FileInfo'

in input file input file*.mzData,*.mzXML,*.mzML,*.dta,*.dta2d,*.mgf,*.featureXML,*.consensusXML,*.idXML,*.pepXML,*.fid

in_type input file type -- default: determined from file extension or contentmzData,mzXML,mzML,dta,dta2d,mgf,featureXML,consensusXML,idXML,pepXML,fid

out Optional output file. If left out, the output is written to the command line.output file*.txt

out_tsv Second optional output file. Tab separated flat text file.output file*.csv

mfalse Show meta information about the whole experimenttrue,false

pfalse Shows data processing informationtrue,false

sfalse Computes a five-number statistics of intensities, qualities, and widthstrue,false

dfalse Show detailed listing of all spectra and chromatograms (peak files only)true,false

cfalse Check for corrupt data in the file (peak files only)true,false

vfalse Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)true,false

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false