Legend:
required parameter
advanced parameter
+InternalCalibrationApplies an internal calibration.
version1.10.0
Version of the tool that generated this parameters file.
++1Instance '1' section for 'InternalCalibration'
in
input peak file input file*.mzML,*.featureXML
out
output file output file*.mzML,*.featureXML
ref_peaks
input file containing reference m/z values (either as textfile with one m/z per line and no header or as idXML file)input file*.csv,*.idXML
typespectrumwise
The kind of internal calibration that should be applied.spectrumwise,global
trafo
output transformation file (only for global calibration)output file*.trafoXML
log
Name of log file (created only when specified)
debug0
Sets the debug level
threads1
Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse
Disables progress logging to command linetrue,false
testfalse
Enables the test mode (needed for internal use only)true,false
+++algorithmSettings for the internal calibration.
mz_tolerance1
Allowed tolerance between peak and reference m/z.0:∞
mz_tolerance_unitDa
Unit for mz_tolerance.Da,ppm
rt_tolerance10
Allowed tolerance between peak and reference rt.