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required parameter

advanced parameter

+NoiseFilterGaussianRemoves noise from profile spectra by using Gaussian filter (on uniform as well as non-uniform data).

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'NoiseFilterGaussian'

in input raw data file input file*.mzML

out output raw data file output file*.mzML

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false

+++algorithmAlgorithm parameters section

gaussian_width0.2 Use a gaussian filter width which has approximately the same width as your mass peaks (FWHM in m/z).

ppm_tolerance10 Gaussian width, depending on the m/z position.
The higher the value, the wider the peak and therefore the wider the gaussian.

use_ppm_tolerancefalse If true, instead of the gaussian_width value, the ppm_tolerance is used. The gaussian is calculated in each step anew, so this is much slower.true,false