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required parameter

advanced parameter

+OpenSwathFeatureXMLToTSVConverts a featureXML to a mProphet tsv.

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'OpenSwathFeatureXMLToTSV'

in[] Input files separated by blankinput file*.featureXML

tr TraML transition fileinput file*.traML

out tsv output file (mProphet compatible)output file*.csv

short_formatfalse Whether to write short (one peptide per line) or long format (one transition per line).true,false

best_scoring_peptide If only the best scoring feature per peptide should be printed, give the variable name

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false