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required parameter

advanced parameter

+OpenSwathRTNormalizerThis tool will take a description of RT peptides and their normalized retention time to write out a transformation file on how to transoform the RT space into the normalized space.

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'OpenSwathRTNormalizer'

in[] Input files separated by blankinput file*.mzML

tr transition file with the RT peptides ('TraML' or 'csv')input file*.csv,*.traML

out output fileoutput file*.trafoXML

rt_norm RT normalization file (how to map the RTs of this run to the ones stored in the library)input file*.trafoXML

min_rsq0.95 Minimum r-squared of RT peptides regression

min_coverage0.6 Minimum relative amount of RT peptides to keep

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false