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required parameter

advanced parameter

+OpenSwathRewriteToFeatureXMLCombines featureXML and mProphet tsv to FDR filtered featureXML.

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'OpenSwathRewriteToFeatureXML'

csv mProphet tsv output file: "all_peakgroups.xls"input file*.csv

featureXML input featureXML fileinput file*.featureXML

out output featureXML fileoutput file*.featureXML

FDR_cutoff-1 FDR cutoff (e.g. to remove all features with a an m_score above 0.05 use 0.05 here)

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false