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required parameter

advanced parameter

+PTPredictpredicts the likelihood of peptides to be proteotypic via svm_model which is trained by PTModel

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'PTPredict'

in input file input file*.idXML

out output file
output file*.idXML

svm_model svm model in libsvm format (can be produced by PTModel)input file*.txt

max_number_of_peptides100000 the maximum number of peptides considered at once (bigger number will lead to faster results but needs more memory).

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false