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required parameter

advanced parameter

+PrecursorMassCorrectorCorrects the precursor entries of MS/MS spectra, by using MS1 information.

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'PrecursorMassCorrector'

in Input mzML file containing the spectra.input file*.mzML

out Output mzML file.output file*.mzML

feature_in Input featureXML file, containing features; if set, the MS/MS spectra precursor entries
will be matched to the feature m/z values if possible.input file*.featureXML

precursor_mass_tolerance1.5 Maximal deviation in Th which is acceptable to be corrected;
this value should be set to the instruments selection window.0:∞

max_charge3 Maximal charge that should be assumed for precursor peaks

intensity_threshold-1 Intensity threshold value for isotope wavelet feature finder, please look at the documentation of the class for details.

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false