Legend:
required parameter
advanced parameter
+ProteinInferenceProtein inference based on the number of identified peptides.
version1.10.0
Version of the tool that generated this parameters file.
++1Instance '1' section for 'ProteinInference'
in
input fileinput file*.idXML
out
output fileoutput file*.idXML
min_peptides_per_protein2
Minimal number of peptides needed for a protein identification1:∞
treat_charge_variants_separatelyfalse
If this flag is set, different charge variants of the same peptide sequence count as inidividual evidences.true,false
treat_modification_variants_separatelyfalse
If this flag is set, different modification variants of the same peptide sequence count as individual evidences.true,false
log
Name of log file (created only when specified)
debug0
Sets the debug level
threads1
Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse
Disables progress logging to command linetrue,false
testfalse
Enables the test mode (needed for internal use only)true,false