Legend:
required parameter
advanced parameter
+SpectraFilterParentPeakMowerApplies thresholdfilter to peak spectra.
version1.10.0
Version of the tool that generated this parameters file.
++1Instance '1' section for 'SpectraFilterParentPeakMower'
in
input file input file*.mzML
out
output file output file*.mzML
log
Name of log file (created only when specified)
debug0
Sets the debug level
threads1
Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse
Disables progress logging to command linetrue,false
testfalse
Enables the test mode (needed for internal use only)true,false
+++algorithmAlgorithm parameter subsection.
window_size2
The size of the m/z window where the peaks are removed, +/- window_size.
default_charge2
If the precursor has no charge set, the default charge is assumed.
clean_all_charge_states1
Set to 1 if precursor ions of all possible charge states should be removed.
consider_NH3_loss1
Whether NH3 loss peaks from the precursor should be removed.
consider_H2O_loss1
Whether H2O loss peaks from the precursor should be removed.
reduce_by_factor0
Reduce the intensities of the precursor and related ions by a given factor (set 'set_to_zero' to 0).
factor1000
Factor which is used to reduce the intensities if 'reduce_by_factor' is selected.
set_to_zero1
Reduce the intensities of the precursor and related ions to zero.