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+TextExporterExports various XML formats to a text file.

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'TextExporter'

in Input file input file*.featureXML,*.consensusXML,*.idXML,*.mzML

out Output file (mandatory for featureXML and idXML)output file*.csv

separator The used separator character(s); if not set the 'tab' character is used

replacement_ Used to replace occurrences of the separator in strings before writing, if 'quoting' is 'none'

quotingnone Method for quoting of strings: 'none' for no quoting, 'double' for quoting with doubling of embedded quotes,
'escape' for quoting with backslash-escaping of embedded quotesnone,double,escape

no_idsfalse Supresses output of identification data.true,false

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false

+++featureOptions for featureXML input files

minimalfalse Set this flag to write only three attributes: RT, m/z, and intensity.true,false

+++idOptions for idXML files

proteins_onlyfalse Set this flag if you want only protein information from an idXML filetrue,false

peptides_onlyfalse Set this flag if you want only peptide information from an idXML filetrue,false

first_dim_rtfalse If this flag is set the first_dim RT of the peptide hits will also be printed (if present).true,false

+++consensusfeatureOptions for consensusXML files

consensus_centroids Output file for centroids of consensus featuresoutput file*.csv

consensus_elements Output file for elements of consensus featuresoutput file*.csv

consensus_features Output file for consensus features and contained elements from all maps (writes 'nan's if elements are missing)output file*.csv

sorting_methodnone Sorting options can be combined. The precedence is: sort_by_size, sort_by_maps, sorting_methodnone,RT,MZ,RT_then_MZ,intensity,quality_decreasing,quality_increasing

sort_by_mapsfalse Apply a stable sort by the covered maps, lexicographicallytrue,false

sort_by_sizefalse Apply a stable sort by decreasing size (i.e., the number of elements)true,false