Legend:
required parameter
advanced parameter
+ERPairFinderUtil which can be used to evaluate pair ratios on enhanced resolution (zoom) scans.
version1.10.0
Version of the tool that generated this parameters file.
++1Instance '1' section for 'ERPairFinder'
in
Input mzML file containing the ER spectra.input file*.mzML
pair_in
Pair-file in the format: m/z-light m/z-heavy charge rtinput file*.txt
out
Output consensusXML file were the pairs of the feature are written into.output file*.consensusXML
feature_out
Output featureXML file, only written if given, skipped otherwise.output file*.featureXML
precursor_mass_tolerance0.3
Precursor mass tolerance which is used for the pair finding and the matching of the given pair m/z values to the features.0:∞
RT_tolerance200
Maximal deviation in RT dimension in seconds a feature can have when comparing to the RT values given in the pair file1:∞
max_charge3
Maximal charge state features should be search for.1:∞
intensity_threshold-1
Intensity threshold, for the meaning see the documentation of the IsotopeWaveletFeatureFinder documentation.-1:∞
max_isotope3
Max isotope of the isotope distribution to be considered2:∞
expansion_range5
The range that is used to extend the isotope distribution with null intensity peaks in Th.0:∞
log
Name of log file (created only when specified)
debug0
Sets the debug level
threads1
Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse
Disables progress logging to command linetrue,false
testfalse
Enables the test mode (needed for internal use only)true,false