Legend:

required parameter

advanced parameter

+ImageCreatorTransforms an LC-MS map into an image.

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'ImageCreator'

in input file input file*.mzML

in_featureXML input file input file*.featureXML

out output fileoutput file*.png,*.jpg,*.bmp,*.tiff,*.ppm

out_type The image format. Set this if you want to force a format not reflected by the 'out' filename.png,jpg,bmp,tiff,ppm

width1024 Number of pixels in m/z dimension.
If 0, one pixel per Th.0:∞

height1024 Number of pixels in RT dimension.
If 0, one pixel per spectrum.0:∞

background_color#FFFFFF Background color e.g.: "#FF0000" to choose red as background color

feature_color#000000 Feature color e.g.: "#00FF00" to choose green as feature color

gradient Intensity gradient that defines colors for the range between 0 and 100.
Example: '0,#FFFFFF;50,#FF0000;100,#000000'

max_intensity0 Maximum peak intensity used to determine range for colors.
If 0, this is determined from the data.

log_intensityfalse Apply logarithm to intensity valuestrue,false

transposefalse flag to transpose the resampled matrix (RT vs. m/z).
Per default, dimensions run bottom-up in RT and left-right in m/z.true,false

precursorsfalse Mark locations of MS2 precursors.
true,false

precursor_color#000000 Color for precursor marks (color code or word, e.g. 'black') (requires 'precursors' flag to be active)

precursor_size2 Size of the precursor marks (requires 'precursors' flag to be active)1:3

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false