Legend:
required parameter
advanced parameter
+QCEmbedderproduces qcml files
version1.10.0
Version of the tool that generated this parameters file.
++1Instance '1' section for 'QCEmbedder'
in
Input qcml fileinput file*.qcML
qp
Target attachment table.
qp_acc
The accession number of the given qp, only needed if qp is not yet contained in the run/set.
name
The name of the target run or set that contains the requested quality parameter.
run
The file from which the name of the target run that contains the requested quality parameter is taken. This overrides the name parameter!input file*.mzML
plot
Plot file to be added to target quality parameter. (Plot file generated from csv output.)input file*.PNG
table
Table file that will be added as attachment to the given qc.input file*.csv
out
Output extended/reduced qcML fileoutput file*.qcML
log
Name of log file (created only when specified)
debug0
Sets the debug level
threads1
Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse
Disables progress logging to command linetrue,false
testfalse
Enables the test mode (needed for internal use only)true,false