Legend:

required parameter

advanced parameter

+RNPxlXICFilterRemove MS2 spectra from treatment based on the fold change between control and treatment.

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'RNPxlXICFilter'

control input mzML fileinput file*.mzML

treatment input mzML fileinput file*.mzML

fold_change2 fold change between XICs

rt_tol20 RT tolerance in [s] for finding max peak (whole RT range around RT middle)

mz_tol10 m/z tolerance in [ppm] for finding a peak

out output of the treatment file after XIC filtering.output file*.mzML

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false