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required parameter

advanced parameter

+RTEvaluationApplication that evaluates TPs (true positives), TNs, FPs, and FNs for an idXML file with predicted RTs.

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'RTEvaluation'

in input fileinput file*.idXML

out output file output file*.csv

sequences_file Filename of a FASTA file containing protein sequences.
All peptides that are not a substring of a sequence in this file are considered as falseinput file*.fasta

latexfalse indicates whether the output file format of the table should be latex or csvtrue,false

p_value_dim_10.01 Significance level of first dimension RT filter0:1

p_value_dim_20.05 Significance level of second dimension RT filter0:1

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false