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Bzip2Ifstream.h

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00001 // --------------------------------------------------------------------------
00002 //                   OpenMS -- Open-Source Mass Spectrometry
00003 // --------------------------------------------------------------------------
00004 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
00005 // ETH Zurich, and Freie Universitaet Berlin 2002-2012.
00006 //
00007 // This software is released under a three-clause BSD license:
00008 //  * Redistributions of source code must retain the above copyright
00009 //    notice, this list of conditions and the following disclaimer.
00010 //  * Redistributions in binary form must reproduce the above copyright
00011 //    notice, this list of conditions and the following disclaimer in the
00012 //    documentation and/or other materials provided with the distribution.
00013 //  * Neither the name of any author or any participating institution
00014 //    may be used to endorse or promote products derived from this software
00015 //    without specific prior written permission.
00016 // For a full list of authors, refer to the file AUTHORS.
00017 // --------------------------------------------------------------------------
00018 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00019 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00020 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00021 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
00022 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
00023 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
00024 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
00025 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
00026 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
00027 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
00028 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00029 //
00030 // --------------------------------------------------------------------------
00031 // $Maintainer: David Wojnar $
00032 // $Authors: David Wojnar $
00033 // --------------------------------------------------------------------------
00034 
00035 #ifndef OPENMS_FORMAT_BZIP2IFSTREAM_H
00036 #define OPENMS_FORMAT_BZIP2IFSTREAM_H
00037 
00038 #include <OpenMS/config.h>
00039 #include <bzlib.h>
00040 #include <istream>
00041 
00042 namespace OpenMS
00043 {
00047   class OPENMS_DLLAPI Bzip2Ifstream
00048   {
00049 public:
00051     Bzip2Ifstream();
00053     Bzip2Ifstream(const char * filename);
00055     virtual ~Bzip2Ifstream();
00056 
00068     size_t read(char * s, size_t n);
00069 
00075     bool streamEnd() const;
00076 
00080     bool isOpen() const;
00081 
00086     void open(const char * filename);
00087 
00091     void close();
00092 protected:
00094     FILE * file_;
00096     BZFILE * bzip2file_;
00098     size_t     n_buffer_;
00100     int     bzerror_;
00102     bool stream_at_end_;
00103 
00104     //not implemented
00105     Bzip2Ifstream(const Bzip2Ifstream & bzip2);
00106     Bzip2Ifstream & operator=(const Bzip2Ifstream & bzip2);
00107   };
00108 
00109   //return bzip2file???!!!!????
00110   inline bool Bzip2Ifstream::isOpen() const
00111   {
00112     return file_ != NULL;
00113   }
00114 
00115   inline bool Bzip2Ifstream::streamEnd() const
00116   {
00117     return stream_at_end_;
00118   }
00119 
00120 } //namespace OpenMS
00121 #endif //OPENMS_FORMAT_BZIP2IFSTREAM_H

OpenMS / TOPP release 1.10.0 Documentation generated on Thu Mar 7 2013 09:42:37 using doxygen 1.7.1