00001 // -------------------------------------------------------------------------- 00002 // OpenMS -- Open-Source Mass Spectrometry 00003 // -------------------------------------------------------------------------- 00004 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen, 00005 // ETH Zurich, and Freie Universitaet Berlin 2002-2012. 00006 // 00007 // This software is released under a three-clause BSD license: 00008 // * Redistributions of source code must retain the above copyright 00009 // notice, this list of conditions and the following disclaimer. 00010 // * Redistributions in binary form must reproduce the above copyright 00011 // notice, this list of conditions and the following disclaimer in the 00012 // documentation and/or other materials provided with the distribution. 00013 // * Neither the name of any author or any participating institution 00014 // may be used to endorse or promote products derived from this software 00015 // without specific prior written permission. 00016 // For a full list of authors, refer to the file AUTHORS. 00017 // -------------------------------------------------------------------------- 00018 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00019 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00020 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00021 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING 00022 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, 00023 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, 00024 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; 00025 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, 00026 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR 00027 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF 00028 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00029 // 00030 // -------------------------------------------------------------------------- 00031 // $Maintainer: David Wojnar $ 00032 // $Authors: David Wojnar $ 00033 // -------------------------------------------------------------------------- 00034 00035 #ifndef OPENMS_FORMAT_BZIP2IFSTREAM_H 00036 #define OPENMS_FORMAT_BZIP2IFSTREAM_H 00037 00038 #include <OpenMS/config.h> 00039 #include <bzlib.h> 00040 #include <istream> 00041 00042 namespace OpenMS 00043 { 00047 class OPENMS_DLLAPI Bzip2Ifstream 00048 { 00049 public: 00051 Bzip2Ifstream(); 00053 Bzip2Ifstream(const char * filename); 00055 virtual ~Bzip2Ifstream(); 00056 00068 size_t read(char * s, size_t n); 00069 00075 bool streamEnd() const; 00076 00080 bool isOpen() const; 00081 00086 void open(const char * filename); 00087 00091 void close(); 00092 protected: 00094 FILE * file_; 00096 BZFILE * bzip2file_; 00098 size_t n_buffer_; 00100 int bzerror_; 00102 bool stream_at_end_; 00103 00104 //not implemented 00105 Bzip2Ifstream(const Bzip2Ifstream & bzip2); 00106 Bzip2Ifstream & operator=(const Bzip2Ifstream & bzip2); 00107 }; 00108 00109 //return bzip2file???!!!!???? 00110 inline bool Bzip2Ifstream::isOpen() const 00111 { 00112 return file_ != NULL; 00113 } 00114 00115 inline bool Bzip2Ifstream::streamEnd() const 00116 { 00117 return stream_at_end_; 00118 } 00119 00120 } //namespace OpenMS 00121 #endif //OPENMS_FORMAT_BZIP2IFSTREAM_H
| OpenMS / TOPP release 1.10.0 | Documentation generated on Thu Mar 7 2013 09:42:37 using doxygen 1.7.1 |