CVTermList.h

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// $Maintainer: Andreas Bertsch $
// $Authors: Andreas Bertsch $
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#ifndef OPENMS_METADATA_CVTERMLIST_H
#define OPENMS_METADATA_CVTERMLIST_H

#include <OpenMS/METADATA/CVTerm.h>
#include <OpenMS/METADATA/MetaInfoInterface.h>
#include <OpenMS/DATASTRUCTURES/CVMappingRule.h>
#include <OpenMS/FORMAT/ControlledVocabulary.h>

namespace OpenMS
{

  class OPENMS_DLLAPI CVTermList :
    public MetaInfoInterface
  {
public:

    CVTermList();

    CVTermList(const CVTermList & rhs);

    virtual ~CVTermList();

    CVTermList & operator=(const CVTermList & rhs);


    void setCVTerms(const std::vector<CVTerm> & terms);

    void replaceCVTerm(const CVTerm & cv_term);

    void replaceCVTerms(const std::vector<CVTerm> & cv_terms, const String & accession);

    void replaceCVTerms(const Map<String, std::vector<CVTerm> > & cv_term_map);

    const Map<String, std::vector<CVTerm> > & getCVTerms() const;

    void addCVTerm(const CVTerm & term);

    //bool checkCVTerms(const ControlledVocabulary& cv) const;

    //void correctCVTermNames();


    bool operator==(const CVTermList & cv_term_list) const;

    bool operator!=(const CVTermList & cv_term_list) const;

    bool hasCVTerm(const String & accession) const;

    bool checkCVTerms(const CVMappingRule & rule, const ControlledVocabulary & cv) const;

    bool empty() const;
    //}

protected:

    Map<String, std::vector<CVTerm> > cv_terms_;

  };

} // namespace OpenMS

#endif // OPENMS_DATASTRUCTURES_CVTERMLIST_H