CompleteLinkage.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Mathias Walzer $
// $Authors: $
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//
#ifndef OPENMS_COMPARISON_CLUSTERING_COMPLETELINKAGE_H
#define OPENMS_COMPARISON_CLUSTERING_COMPLETELINKAGE_H

#include <vector>
#include <set>
#include <cmath>

#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/DistanceMatrix.h>
#include <OpenMS/COMPARISON/CLUSTERING/ClusterFunctor.h>

namespace OpenMS
{
  class OPENMS_DLLAPI CompleteLinkage :
    public ClusterFunctor, public ProgressLogger
  {
public:

    CompleteLinkage();

    CompleteLinkage(const CompleteLinkage & source);

    virtual ~CompleteLinkage();

    CompleteLinkage & operator=(const CompleteLinkage & source);

    void operator()(DistanceMatrix<Real> & original_distance, std::vector<BinaryTreeNode> & cluster_tree, const Real threshold = 1) const;

    static ClusterFunctor * create()
    {
      return new CompleteLinkage();
    }

    static const String getProductName()
    {
      return "CompleteLinkage";
    }

  };

}
#endif //OPENMS_COMPARISON_CLUSTERING_COMPLETELINKAGE_H