ConsensusID.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Sven Nahnsen $
// $Authors: Andreas Bertsch, Marc Sturm, Sven Nahnsen $
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#ifndef OPENMS_ANALYSIS_ID_CONSENSUSID_H
#define OPENMS_ANALYSIS_ID_CONSENSUSID_H

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/METADATA/PeptideIdentification.h>

#include <vector>

namespace OpenMS
{
  class OPENMS_DLLAPI ConsensusID :
    public DefaultParamHandler
  {
public:
    ConsensusID();

    void apply(std::vector<PeptideIdentification> & ids);

private:
    ConsensusID(const ConsensusID &);

    ConsensusID & operator=(const ConsensusID &);

    void ranked_(std::vector<PeptideIdentification> & ids);

    void average_(std::vector<PeptideIdentification> & ids);

    void PEPMatrix_(std::vector<PeptideIdentification> & ids);

    void PEPIons_(std::vector<PeptideIdentification> & ids);

    void Minimum_(std::vector<PeptideIdentification> & ids);

//already done in APPLICATIONS/TOPP/ConsensusID.C
    void mapIdentifications_(std::vector<PeptideIdentification> & sorted_ids, const std::vector<PeptideIdentification> & ids);

  };

} // namespace OpenMS

#endif // OPENMS_ANALYSIS_ID_CONSENSUSID_H