DeNovoIonScoring.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2012.
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// $Maintainer: Sandro Andreotti $
// $Authors: Sandro Andreotti, Andreas Bertsch$
// --------------------------------------------------------------------------

#ifndef OPENMS_ANALYSIS_DENOVO_DENOVOIONSCORING_H
#define OPENMS_ANALYSIS_DENOVO_DENOVOIONSCORING_H

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <vector>

namespace OpenMS
{
  class OPENMS_DLLAPI DeNovoIonScoring :
    public DefaultParamHandler
  {
public:
    class IonScore
    {
public:
      DoubleReal score;

      DoubleReal position;

      SignedSize index;


      IonScore() :
        score(0),
        position(0.0),
        index(-1)
      {
      }

      IonScore(const IonScore & rhs) :
        score(rhs.score),
        position(rhs.score),
        index(rhs.index)
      {
      }

      virtual ~IonScore()
      {
      }

      IonScore & operator=(const IonScore & rhs)
      {
        if (this != &rhs)
        {
          score = rhs.score;
          position = rhs.position;
          index = rhs.index;
        }
        return *this;
      }

    };



    DeNovoIonScoring();

    virtual ~DeNovoIonScoring();

    DeNovoIonScoring(const DeNovoIonScoring & rhs);

    DeNovoIonScoring & operator=(const DeNovoIonScoring & rhs);

    virtual void getIonScores(std::vector<IonScore> & ion_scores, const RichPeakSpectrum & spec) = 0;

    virtual void getIonScores(std::vector<std::vector<IonScore> > & ion_scores, const RichPeakMap & exp) = 0;
  };

} // namespace OpenMS

#endif // OPENMS_ANALYSIS_DENOVO_DENOVOIONSCORING_H