DetectabilitySimulation.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// $Maintainer: Stephan Aiche$
// $Authors: Stephan Aiche, Chris Bielow$
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#ifndef OPENMS_SIMULATION_DETECTABILITYSIMULATION_H
#define OPENMS_SIMULATION_DETECTABILITYSIMULATION_H

#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/SIMULATION/SimTypes.h>

namespace OpenMS
{
  class OPENMS_DLLAPI DetectabilitySimulation :
    public DefaultParamHandler
  {

public:

    DetectabilitySimulation();

    DetectabilitySimulation(const DetectabilitySimulation & source);

    virtual ~DetectabilitySimulation();

    DetectabilitySimulation & operator=(const DetectabilitySimulation & source);

    void filterDetectability(FeatureMapSim & features);


    void predictDetectabilities(std::vector<String> & peptides_vector, std::vector<DoubleReal> & labels,
                                std::vector<DoubleReal> & detectabilities);
private:
    void setDefaultParams_();

    void updateMembers_();

    DoubleReal min_detect_;

    OpenMS::String dt_model_file_;

protected:
    void svmFilter_(FeatureMapSim &);

    void noFilter_(FeatureMapSim &);

  };

}

#endif