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Digestion.h

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00001 // --------------------------------------------------------------------------
00002 //                   OpenMS -- Open-Source Mass Spectrometry
00003 // --------------------------------------------------------------------------
00004 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
00005 // ETH Zurich, and Freie Universitaet Berlin 2002-2012.
00006 //
00007 // This software is released under a three-clause BSD license:
00008 //  * Redistributions of source code must retain the above copyright
00009 //    notice, this list of conditions and the following disclaimer.
00010 //  * Redistributions in binary form must reproduce the above copyright
00011 //    notice, this list of conditions and the following disclaimer in the
00012 //    documentation and/or other materials provided with the distribution.
00013 //  * Neither the name of any author or any participating institution
00014 //    may be used to endorse or promote products derived from this software
00015 //    without specific prior written permission.
00016 // For a full list of authors, refer to the file AUTHORS.
00017 // --------------------------------------------------------------------------
00018 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00019 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00020 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00021 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
00022 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
00023 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
00024 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
00025 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
00026 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
00027 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
00028 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00029 //
00030 // --------------------------------------------------------------------------
00031 // $Maintainer: Andreas Bertsch $
00032 // $Authors: Marc Sturm $
00033 // --------------------------------------------------------------------------
00034 
00035 #ifndef OPENMS_METADATA_DIGESTION_H
00036 #define OPENMS_METADATA_DIGESTION_H
00037 
00038 #include <OpenMS/DATASTRUCTURES/String.h>
00039 #include <OpenMS/METADATA/SampleTreatment.h>
00040 
00041 namespace OpenMS
00042 {
00050   class OPENMS_DLLAPI Digestion :
00051     public SampleTreatment
00052   {
00053 public:
00055     Digestion();
00057     Digestion(const Digestion &);
00059     virtual ~Digestion();
00060 
00062     Digestion & operator=(const Digestion &);
00063 
00070     virtual bool operator==(const SampleTreatment & rhs) const;
00071 
00073     virtual SampleTreatment * clone() const;
00074 
00076     const String & getEnzyme() const;
00078     void setEnzyme(const String & enzyme);
00079 
00081     DoubleReal getDigestionTime() const;
00083     void setDigestionTime(DoubleReal digestion_time);
00084 
00086     DoubleReal getTemperature() const;
00088     void setTemperature(DoubleReal temperature);
00089 
00091     DoubleReal getPh() const;
00093     void setPh(DoubleReal ph);
00094 
00095 protected:
00096     String enzyme_;
00097     DoubleReal digestion_time_;
00098     DoubleReal temperature_;
00099     DoubleReal ph_;
00100   };
00101 } // namespace OpenMS
00102 
00103 #endif // OPENMS_METADATA_DIGESTION_H

OpenMS / TOPP release 1.10.0 Documentation generated on Thu Mar 7 2013 09:42:38 using doxygen 1.7.1