Fitter1D.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Clemens Groepl $
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#ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H
#define OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H

#include <OpenMS/DATASTRUCTURES/IsotopeCluster.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/KERNEL/Feature.h>
#include <OpenMS/MATH/STATISTICS/BasicStatistics.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderDefs.h>

namespace OpenMS
{
  class InterpolationModel;

  class OPENMS_DLLAPI Fitter1D :
    public DefaultParamHandler,
    public FeatureFinderDefs
  {
public:

    typedef IsotopeCluster::IndexSet IndexSet;
    typedef IsotopeCluster::ChargedIndexSet ChargedIndexSet;
    typedef Feature::CoordinateType CoordinateType;
    typedef Feature::QualityType QualityType;
    typedef Peak1D PeakType;
    typedef std::vector<PeakType> RawDataArrayType;
    typedef RawDataArrayType::iterator PeakIterator;

    Fitter1D();

    Fitter1D(const Fitter1D & source);

    virtual ~Fitter1D()
    {
    }

    virtual Fitter1D & operator=(const Fitter1D & source);

    virtual QualityType fit1d(const RawDataArrayType & /* range */, InterpolationModel * & /* model */)
    {
      throw Exception::NotImplemented(__FILE__, __LINE__, __PRETTY_FUNCTION__);
    }

    static void registerChildren();

protected:

    CoordinateType tolerance_stdev_box_;
    CoordinateType min_;
    CoordinateType max_;
    CoordinateType stdev1_;
    CoordinateType stdev2_;
    Math::BasicStatistics<> statistics_;
    CoordinateType interpolation_step_;

    virtual void updateMembers_();

  };

}

#endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_FITTER1D_H