IDEvaluationBase.h

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//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2012.
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// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
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#ifndef OPENMS_VISUAL_APPLICATIONS_IDEVALUATIONBASE_H
#define OPENMS_VISUAL_APPLICATIONS_IDEVALUATIONBASE_H

//OpenMS
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/VISUAL/Spectrum1DWidget.h>

//QT
#include <QtGui/QMainWindow>
#include <QtGui/QWorkspace>
#include <QtGui/QButtonGroup>
#include <QtCore/QProcess>
#include <QtGui/QSplashScreen>

class QToolBar;
class QListWidget;
class QTextEdit;
class QWorkspace;
class QLabel;
class QWidget;
class QTreeWidget;
class QTreeWidgetItem;
class QWebView;
class QNetworkAccessManager;
class QNetworkReply;

namespace OpenMS
{
  class TOPPASWidget;
  class TOPPASScene;
  class TOPPASTabBar;
  class TOPPASResources;

  class OPENMS_GUI_DLLAPI IDEvaluationBase :
    public QMainWindow,
    public DefaultParamHandler
  {
    Q_OBJECT

public:

    IDEvaluationBase(QWidget * parent = 0);
    virtual ~IDEvaluationBase();

    QSize sizeHint() const;

    void setVisibleArea(double low, double high);

    const MSExperiment<>& getPoints() const;

    static StringList getSupportedImageFormats();

public slots:

    void resetZoom();

    void setIntensityMode(int index);

    bool getPoints(std::vector<PeptideIdentification> & peptides /* cannot be const, to avoid copy */, const std::vector<DoubleReal> & q_value_thresholds, MSSpectrum<> & points);
    
    bool loadCurve(const String& file_name, MSSpectrum<>& points);
    bool addSearchFile(const String & file_name);
    void openFileDialog();
    void saveImageAs();
    bool exportAsImage(const QString & file_name, String & error_message, const QString & format = "");
    //void updateCurrentPath();
    void showAboutDialog();
    void showStatusMessage(std::string msg, OpenMS::UInt time);
    //void showCursorStatus(double x, double y);
    //void closeFile();
    //void updateToolBar();

    bool loadFiles(const StringList & list);

    void showURL();

protected slots:

    //void updateMenu();
    //void showAsWindow_(TOPPASWidget* sw, const String& caption, const int special_id = -1);




protected:

    QTextEdit * log_;
    QTextEdit * desc_;

    QWorkspace * ws_;

    Spectrum1DWidget * spec_1d_;

    QLabel * message_label_;

    TOPPASWidget * window_(int id) const;


    String current_path_;

    void closeEvent(QCloseEvent * event);
    void keyPressEvent(QKeyEvent * e);

    enum LogState
    {
      LS_NOTICE,             
      LS_WARNING,            
      LS_ERROR               
    };
    void showLogMessage_(LogState state, const String & heading, const String & body);

    std::vector<DoubleReal> q_value_thresholds_;

    // holds the computed curves for easy export to outside
    MSExperiment<> data_;

    QToolBar * tool_bar_;
    //common intensity modes

    QButtonGroup * intensity_button_group_;
    //1D specific stuff

  }; //class

} //namespace

#endif // OPENMS_VISUAL_APPLICATIONS_IDEVALUATIONBASE_H