ItraqChannelExtractor.h

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// $Maintainer: Chris Bielow $
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#ifndef OPENMS_ANALYSIS_QUANTITATION_ITRAQCHANNELEXTRACTOR_H
#define OPENMS_ANALYSIS_QUANTITATION_ITRAQCHANNELEXTRACTOR_H

#include <vector>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/ANALYSIS/QUANTITATION/ItraqConstants.h>

namespace OpenMS
{

  class OPENMS_DLLAPI ItraqChannelExtractor :
    public DefaultParamHandler,
    public ItraqConstants
  {

public:

    typedef ItraqConstants::ChannelMapType ChannelMapType;

    ItraqChannelExtractor();

    explicit ItraqChannelExtractor(Int itraq_type);

    ItraqChannelExtractor(Int itraq_type, const Param & param);

    ItraqChannelExtractor(const ItraqChannelExtractor & cp);

    ItraqChannelExtractor & operator=(const ItraqChannelExtractor & rhs);


    void run(const MSExperiment<Peak1D> & ms_exp_data, ConsensusMap & consensus_map);

protected:

    void setDefaultParams_();

    void updateMembers_();


private:

    void init_();

    Int itraq_type_;

    ChannelMapType channel_map_;

  };   // !class

} // !namespace

#endif // OPENMS_ANALYSIS_QUANTITATION_ITRAQCHANNELEXTRACTOR_H