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LmaGaussModel.h

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00001 // --------------------------------------------------------------------------
00002 //                   OpenMS -- Open-Source Mass Spectrometry
00003 // --------------------------------------------------------------------------
00004 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
00005 // ETH Zurich, and Freie Universitaet Berlin 2002-2012.
00006 //
00007 // This software is released under a three-clause BSD license:
00008 //  * Redistributions of source code must retain the above copyright
00009 //    notice, this list of conditions and the following disclaimer.
00010 //  * Redistributions in binary form must reproduce the above copyright
00011 //    notice, this list of conditions and the following disclaimer in the
00012 //    documentation and/or other materials provided with the distribution.
00013 //  * Neither the name of any author or any participating institution
00014 //    may be used to endorse or promote products derived from this software
00015 //    without specific prior written permission.
00016 // For a full list of authors, refer to the file AUTHORS.
00017 // --------------------------------------------------------------------------
00018 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00019 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00020 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00021 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
00022 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
00023 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
00024 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
00025 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
00026 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
00027 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
00028 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00029 //
00030 // --------------------------------------------------------------------------
00031 // $Maintainer: Clemens Groepl $
00032 // $Authors: $
00033 // --------------------------------------------------------------------------
00034 
00035 #ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_LMAGAUSSMODEL_H
00036 #define OPENMS_TRANSFORMATIONS_FEATUREFINDER_LMAGAUSSMODEL_H
00037 
00038 #include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h>
00039 #include <OpenMS/MATH/STATISTICS/BasicStatistics.h>
00040 
00041 
00042 namespace OpenMS
00043 {
00044 
00052   class OPENMS_DLLAPI LmaGaussModel :
00053     public InterpolationModel
00054   {
00055 
00056 public:
00057     typedef InterpolationModel::CoordinateType CoordinateType;
00058     typedef Math::BasicStatistics<CoordinateType> BasicStatistics;
00059 
00061     LmaGaussModel();
00062 
00064     LmaGaussModel(const LmaGaussModel & source);
00065 
00067     virtual ~LmaGaussModel();
00068 
00070     virtual LmaGaussModel & operator=(const LmaGaussModel & source);
00071 
00073     static BaseModel<1> * create()
00074     {
00075       return new LmaGaussModel();
00076     }
00077 
00079     static const String getProductName()
00080     {
00081       return "LmaGaussModel";
00082     }
00083 
00085     void setOffset(CoordinateType offset);
00086 
00088     void setSamples();
00089 
00091     CoordinateType getCenter() const;
00092 
00093 protected:
00094     CoordinateType  min_;
00095     CoordinateType  max_;
00096     BasicStatistics statistics_;
00097     CoordinateType scale_factor_;
00098     CoordinateType standard_deviation_;
00099     CoordinateType expected_value_;
00100 
00101     void updateMembers_();
00102   };
00103 }
00104 
00105 #endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_LMAGAUSSMODEL_H

OpenMS / TOPP release 1.10.0 Documentation generated on Thu Mar 7 2013 09:42:40 using doxygen 1.7.1