MRMFeatureFinderScoring.h File Reference

#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/FeatureXMLFile.h>
#include <OpenMS/FORMAT/TransformationXMLFile.h>
#include <OpenMS/FORMAT/TraMLFile.h>
#include <OpenMS/KERNEL/MRMTransitionGroup.h>
#include <OpenMS/KERNEL/MRMFeature.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/KERNEL/MSChromatogram.h>
#include <OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h>
#include <OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/DataStructures.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/ALGO/Scoring.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/ALGO/MRMScoring.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h>
#include <OpenMS/ANALYSIS/OPENSWATH/SpectrumAddition.h>

Go to the source code of this file.

Classes
struct	OpenSwath_Scores
	A structure to hold the different scores computed by the FeatureFinder. More...
class	MRMFeatureFinderScoring
	The MRMFeatureFinder finds and scores peaks of transitions that coelute. More...
Namespaces
namespace	OpenMS
	Main OpenMS namespace.
Defines
#define	run_identifier   "unique_run_identifier"
#define	USE_SP_INTERFACE
Functions
bool	SortDoubleDoublePairFirst (const std::pair< double, double > &left, const std::pair< double, double > &right)

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Define Documentation

#define run_identifier   "unique_run_identifier"

Referenced by MRMFeatureFinderScoring::pickExperiment(), and MRMFeatureFinderScoring::scorePeakgroups_().

#define USE_SP_INTERFACE

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Function Documentation

bool SortDoubleDoublePairFirst	(	const std::pair< double, double > &	left,
		const std::pair< double, double > &	right
	)