MascotXMLFile.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// $Maintainer: Nico Pfeifer $
// $Authors: Nico Pfeifer $
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#ifndef OPENMS_FORMAT_MASCOTXMLFILE_H
#define OPENMS_FORMAT_MASCOTXMLFILE_H

#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/FORMAT/XMLFile.h>
#include <OpenMS/FORMAT/HANDLERS/MascotXMLHandler.h>


namespace OpenMS
{
  class ProteinIdentification;

  class OPENMS_DLLAPI MascotXMLFile :
    public Internal::XMLFile
  {
public:

    typedef Internal::MascotXMLHandler::RTMapping RTMapping;

    MascotXMLFile();

    void load(const String & filename,
              ProteinIdentification & protein_identification,
              std::vector<PeptideIdentification> & id_data,
              const RTMapping & rt_mapping = RTMapping());

    void load(const String & filename, ProteinIdentification & protein_identification, std::vector<PeptideIdentification> & id_data, std::map<String, std::vector<AASequence> > & peptides, const RTMapping & rt_mapping = RTMapping());

  };

} // namespace OpenMS

#endif // OPENMS_FORMAT_MASCOTXMLFILE_H