ModificationDefinition.h

Go to the documentation of this file.

// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2012.
//
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
//    notice, this list of conditions and the following disclaimer in the
//    documentation and/or other materials provided with the distribution.
//  * Neither the name of any author or any participating institution
//    may be used to endorse or promote products derived from this software
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Andreas Bertsch $
// $Authors: $
// --------------------------------------------------------------------------
//

#ifndef OPENMS_CHEMISTRY_MODIFICATIONDEFINITION_H
#define OPENMS_CHEMISTRY_MODIFICATIONDEFINITION_H

#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/CHEMISTRY/ResidueModification.h>

namespace OpenMS
{
  class OPENMS_DLLAPI ModificationDefinition
  {
public:


    ModificationDefinition();

    ModificationDefinition(const ModificationDefinition & rhs);

    ModificationDefinition(const String & mod);

    virtual ~ModificationDefinition();


    void setTermSpecificity(ResidueModification::Term_Specificity pos);

    ResidueModification::Term_Specificity getTermSpecificity() const;

    void setFixedModification(bool fixed);

    bool isFixedModification() const;

    void setMaxOccurences(UInt num);

    UInt getMaxOccurences() const;

    String getModification() const;

    void setModification(const String & modification);


    ModificationDefinition & operator=(const ModificationDefinition & element);


    bool operator==(const ModificationDefinition & rhs) const;

    bool operator!=(const ModificationDefinition & rhs) const;

    bool operator<(const OpenMS::ModificationDefinition &) const;

protected:

    ResidueModification::Term_Specificity term_spec_;

    const ResidueModification * mod_;

    bool fixed_modification_;

    UInt max_occurences_;
  };

} // namespace OpenMS

#endif