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MzMLValidator.h

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00001 // --------------------------------------------------------------------------
00002 //                   OpenMS -- Open-Source Mass Spectrometry
00003 // --------------------------------------------------------------------------
00004 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
00005 // ETH Zurich, and Freie Universitaet Berlin 2002-2012.
00006 //
00007 // This software is released under a three-clause BSD license:
00008 //  * Redistributions of source code must retain the above copyright
00009 //    notice, this list of conditions and the following disclaimer.
00010 //  * Redistributions in binary form must reproduce the above copyright
00011 //    notice, this list of conditions and the following disclaimer in the
00012 //    documentation and/or other materials provided with the distribution.
00013 //  * Neither the name of any author or any participating institution
00014 //    may be used to endorse or promote products derived from this software
00015 //    without specific prior written permission.
00016 // For a full list of authors, refer to the file AUTHORS.
00017 // --------------------------------------------------------------------------
00018 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00019 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00020 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00021 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
00022 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
00023 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
00024 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
00025 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
00026 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
00027 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
00028 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00029 //
00030 // --------------------------------------------------------------------------
00031 // $Maintainer: Andreas Bertsch $
00032 // $Authors: Marc Sturm $
00033 // --------------------------------------------------------------------------
00034 
00035 #ifndef OPENMS_FORMAT_VALIDATORS_MZMLVALIDATOR_H
00036 #define OPENMS_FORMAT_VALIDATORS_MZMLVALIDATOR_H
00037 
00038 
00039 #include <OpenMS/FORMAT/VALIDATORS/SemanticValidator.h>
00040 #include <OpenMS/FORMAT/ControlledVocabulary.h>
00041 
00042 
00043 namespace OpenMS
00044 {
00045   class ControlledVocabulary;
00046   namespace Internal
00047   {
00048 
00052     class OPENMS_DLLAPI MzMLValidator :
00053       public SemanticValidator
00054     {
00055 public:
00062       MzMLValidator(const CVMappings & mapping, const ControlledVocabulary & cv);
00063 
00065       virtual ~MzMLValidator();
00066 
00067 protected:
00068 
00069       // Docu in base class
00070       void startElement(const XMLCh * const /*uri*/, const XMLCh * const /*local_name*/, const XMLCh * const qname, const xercesc::Attributes & attributes);
00071 
00072       // Docu in base class
00073       virtual String getPath_(UInt remove_from_end = 0) const;
00074 
00075       // Docu in base class
00076       virtual void handleTerm_(const String & path, const CVTerm & parsed_term);
00077 
00079       Map<String, std::vector<CVTerm> > param_groups_;
00080 
00082       String current_id_;
00083 
00085       String binary_data_array_;
00087       String binary_data_type_;
00088 
00089 private:
00090 
00092       MzMLValidator();
00093 
00095       MzMLValidator(const MzMLValidator & rhs);
00096 
00098       MzMLValidator & operator=(const MzMLValidator & rhs);
00099 
00100     };
00101 
00102   }   // namespace Internal
00103 
00104 } // namespace OpenMS
00105 
00106 #endif

OpenMS / TOPP release 1.10.0 Documentation generated on Thu Mar 7 2013 09:42:42 using doxygen 1.7.1