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PTMXMLHandler.h

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00001 // --------------------------------------------------------------------------
00002 //                   OpenMS -- Open-Source Mass Spectrometry
00003 // --------------------------------------------------------------------------
00004 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
00005 // ETH Zurich, and Freie Universitaet Berlin 2002-2012.
00006 //
00007 // This software is released under a three-clause BSD license:
00008 //  * Redistributions of source code must retain the above copyright
00009 //    notice, this list of conditions and the following disclaimer.
00010 //  * Redistributions in binary form must reproduce the above copyright
00011 //    notice, this list of conditions and the following disclaimer in the
00012 //    documentation and/or other materials provided with the distribution.
00013 //  * Neither the name of any author or any participating institution
00014 //    may be used to endorse or promote products derived from this software
00015 //    without specific prior written permission.
00016 // For a full list of authors, refer to the file AUTHORS.
00017 // --------------------------------------------------------------------------
00018 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00019 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00020 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00021 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
00022 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
00023 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
00024 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
00025 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
00026 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
00027 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
00028 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00029 //
00030 // --------------------------------------------------------------------------
00031 // $Maintainer: Andreas Bertsch $
00032 // $Authors: $
00033 // --------------------------------------------------------------------------
00034 
00035 #ifndef OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H
00036 #define OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H
00037 
00038 #include <OpenMS/FORMAT/HANDLERS/XMLHandler.h>
00039 
00040 #include <vector>
00041 #include <map>
00042 #include <fstream>
00043 
00044 namespace OpenMS
00045 {
00046   namespace Internal
00047   {
00051     class OPENMS_DLLAPI PTMXMLHandler :
00052       public XMLHandler
00053     {
00054 public:
00056       PTMXMLHandler(std::map<String, std::pair<String, String> > & ptm_informations, const String & filename);
00057 
00059       virtual ~PTMXMLHandler();
00060 
00062       void writeTo(std::ostream & os);
00063 
00064       // Docu in base class
00065       virtual void endElement(const XMLCh * const /*uri*/, const XMLCh * const /*local_name*/, const XMLCh * const qname);
00066 
00067       // Docu in base class
00068       virtual void startElement(const XMLCh * const /*uri*/, const XMLCh * const /*local_name*/, const XMLCh * const qname, const xercesc::Attributes & attributes);
00069 
00070       // Docu in base class
00071       virtual void characters(const XMLCh * const chars, const XMLSize_t /*length*/);
00072 
00073 protected:
00074       std::map<String, std::pair<String, String> > & ptm_informations_;
00075       String name_, tag_, composition_;
00076       bool open_tag_;
00077     };
00078 
00079   }   // namespace Internal
00080 
00081 } // namespace OpenMS
00082 
00083 #endif // OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H

OpenMS / TOPP release 1.10.0 Documentation generated on Thu Mar 7 2013 09:42:43 using doxygen 1.7.1