PeakIndex.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// $Maintainer: Stephan Aiche$
// $Authors: Marc Sturm $
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#ifndef OPENMS_KERNEL_PEAKINDEX_H
#define OPENMS_KERNEL_PEAKINDEX_H


#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/CONCEPT/Macros.h>
#include <limits>

namespace OpenMS
{
  struct PeakIndex
  {
    inline PeakIndex() :
      peak((std::numeric_limits<Size>::max)()),
      spectrum((std::numeric_limits<Size>::max)())
    {}

    explicit inline PeakIndex(Size peak) :
      peak(peak),
      spectrum((std::numeric_limits<Size>::max)())
    {}

    inline PeakIndex(Size spectrum, Size peak) :
      peak(peak),
      spectrum(spectrum)
    {}

    inline bool isValid() const
    {
      return peak != (std::numeric_limits<Size>::max)();
    }

    inline void clear()
    {
      peak = (std::numeric_limits<Size>::max)();
      spectrum = (std::numeric_limits<Size>::max)();
    }

    template <typename FeatureMapType>
    const typename FeatureMapType::value_type & getFeature(const FeatureMapType & map) const
    {
      OPENMS_PRECONDITION(peak < map.size(), "Feature index exceeds map size");
      return map[peak];
    }

    template <typename PeakMapType>
    const typename PeakMapType::PeakType & getPeak(const PeakMapType & map) const
    {
      OPENMS_PRECONDITION(spectrum < map.size(), "Spectrum index exceeds map size");
      OPENMS_PRECONDITION(peak < map[spectrum].size(), "Peak index exceeds spectrum size");
      return map[spectrum][peak];
    }

    template <typename PeakMapType>
    const typename PeakMapType::SpectrumType & getSpectrum(const PeakMapType & map) const
    {
      OPENMS_PRECONDITION(spectrum < map.size(), "Spectrum index exceeds map size");
      return map[spectrum];
    }

    inline bool operator==(const PeakIndex & rhs) const
    {
      return peak == rhs.peak && spectrum == rhs.spectrum;
    }

    inline bool operator!=(const PeakIndex & rhs) const
    {
      return peak != rhs.peak || spectrum != rhs.spectrum;
    }

    Size peak;
    Size spectrum;
  };

} // namespace OpenMS

#endif // OPENMS_KERNEL_PEAKINDEX_H