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PeptideIdentificationVisualizer.h

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00001 // --------------------------------------------------------------------------
00002 //                   OpenMS -- Open-Source Mass Spectrometry
00003 // --------------------------------------------------------------------------
00004 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
00005 // ETH Zurich, and Freie Universitaet Berlin 2002-2012.
00006 //
00007 // This software is released under a three-clause BSD license:
00008 //  * Redistributions of source code must retain the above copyright
00009 //    notice, this list of conditions and the following disclaimer.
00010 //  * Redistributions in binary form must reproduce the above copyright
00011 //    notice, this list of conditions and the following disclaimer in the
00012 //    documentation and/or other materials provided with the distribution.
00013 //  * Neither the name of any author or any participating institution
00014 //    may be used to endorse or promote products derived from this software
00015 //    without specific prior written permission.
00016 // For a full list of authors, refer to the file AUTHORS.
00017 // --------------------------------------------------------------------------
00018 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00019 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00020 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00021 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
00022 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
00023 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
00024 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
00025 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
00026 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
00027 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
00028 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00029 //
00030 // --------------------------------------------------------------------------
00031 // $Maintainer: Timo Sachsenberg $
00032 // $Authors: Marc Sturm $
00033 // --------------------------------------------------------------------------
00034 
00035 #ifndef OPENMS_VISUAL_VISUALIZER_PEPTIDEIDENTIFICATIONVISUALIZER_H
00036 #define OPENMS_VISUAL_VISUALIZER_PEPTIDEIDENTIFICATIONVISUALIZER_H
00037 
00038 //OpenMS
00039 #include <OpenMS/METADATA/PeptideIdentification.h>
00040 #include <OpenMS/VISUAL/VISUALIZER/BaseVisualizer.h>
00041 #include <OpenMS/VISUAL/VISUALIZER/BaseVisualizerGUI.h>
00042 
00043 
00044 namespace OpenMS
00045 {
00046   class MetaDataBrowser;
00047 
00053   class OPENMS_GUI_DLLAPI PeptideIdentificationVisualizer :
00054     public BaseVisualizerGUI,
00055     public BaseVisualizer<PeptideIdentification>
00056   {
00057     Q_OBJECT
00058 
00059 public:
00061     PeptideIdentificationVisualizer(bool editable = FALSE, QWidget * parent = 0, MetaDataBrowser * caller = 0);
00062 
00064     void load(PeptideIdentification & s, int tree_item_id);
00065 
00066 public slots:
00067 
00068     //Docu in base class
00069     void store();
00070 
00071 protected slots:
00072 
00074     void undo_();
00075 
00083     void updateTree_();
00084 
00085 protected:
00087     MetaDataBrowser * pidv_caller_;
00089     int tree_id_;
00090 
00092 
00093     QLineEdit * identifier_;
00094     QLineEdit * score_type_;
00095     QComboBox * higher_better_;
00096     QLineEdit * identification_threshold_;
00098 
00100     QLineEdit * filter_threshold_;
00101   };
00102 }
00103 #endif

OpenMS / TOPP release 1.10.0 Documentation generated on Thu Mar 7 2013 09:42:43 using doxygen 1.7.1