ProteinInference.h

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// $Maintainer: Chris Bielow $
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#ifndef OPENMS_ANALYSIS_QUANTITATION_PROTEININFERENCE_H
#define OPENMS_ANALYSIS_QUANTITATION_PROTEININFERENCE_H

#include <vector>

#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/KERNEL/Peak2D.h>

namespace OpenMS
{
  class OPENMS_DLLAPI ProteinInference
  {

public:

    typedef Peak2D::IntensityType IntensityType;

    ProteinInference();

    ProteinInference(const ProteinInference & cp);

    ProteinInference & operator=(const ProteinInference & rhs);

    void infer(ConsensusMap & consensus_map,
               const UInt reference_map);


protected:

    void infer_(ConsensusMap & consensus_map,
                const size_t protein_idenfication_index,
                const UInt reference_map);

    bool sortByUnique_(std::vector<PeptideHit> & peptide_hits_local, const bool is_higher_score_better);

  };   // !class

} // !namespace

#endif // OPENMS_ANALYSIS_QUANTITATION_PROTEININFERENCE_H