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ROCCurve.h

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00001 // --------------------------------------------------------------------------
00002 //                   OpenMS -- Open-Source Mass Spectrometry
00003 // --------------------------------------------------------------------------
00004 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
00005 // ETH Zurich, and Freie Universitaet Berlin 2002-2012.
00006 //
00007 // This software is released under a three-clause BSD license:
00008 //  * Redistributions of source code must retain the above copyright
00009 //    notice, this list of conditions and the following disclaimer.
00010 //  * Redistributions in binary form must reproduce the above copyright
00011 //    notice, this list of conditions and the following disclaimer in the
00012 //    documentation and/or other materials provided with the distribution.
00013 //  * Neither the name of any author or any participating institution
00014 //    may be used to endorse or promote products derived from this software
00015 //    without specific prior written permission.
00016 // For a full list of authors, refer to the file AUTHORS.
00017 // --------------------------------------------------------------------------
00018 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00019 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00020 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00021 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
00022 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
00023 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
00024 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
00025 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
00026 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
00027 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
00028 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00029 //
00030 // --------------------------------------------------------------------------
00031 // $Maintainer: Andreas Bertsch $
00032 // $Authors: $
00033 // --------------------------------------------------------------------------
00034 
00035 #ifndef OPENMS_MATH_STATISTICS_ROCCURVE_H
00036 #define OPENMS_MATH_STATISTICS_ROCCURVE_H
00037 
00038 #include <OpenMS/config.h>
00039 #include <OpenMS/CONCEPT/Types.h>
00040 
00041 #include <list>
00042 #include <vector>
00043 
00044 namespace OpenMS
00045 {
00046   namespace Math
00047   {
00055     class OPENMS_DLLAPI ROCCurve
00056     {
00057 public:
00058 
00059       // @name Constructors and Destructors
00060       // @{
00062       ROCCurve();
00063 
00065       virtual ~ROCCurve();
00066 
00068       ROCCurve(const ROCCurve & source);
00069       // @}
00070 
00071       // @name Operators
00072       // @{
00074       ROCCurve & operator=(const ROCCurve & source);
00075       // @}
00076 
00077       // @name Accessors
00078       // @{
00080       void insertPair(double score, bool clas);
00081 
00083       double AUC();
00084 
00086       std::vector<std::pair<double, double> > curve(UInt resolution = 10);
00087 
00089       double cutoffPos(double fraction = 0.95);
00090 
00092       double cutoffNeg(double fraction = 0.95);
00093       // @}
00094 
00095 private:
00096 
00098       class OPENMS_DLLAPI simsortdec
00099       {
00100 public:
00101 
00102         bool operator()(const std::pair<double, bool> & a, const std::pair<double, bool> & b)
00103         {
00104           return b.first < a.first;
00105         }
00106 
00107       };
00108 
00109 
00110       std::list<std::pair<double, bool> > score_clas_pairs_;
00111 
00112       UInt pos_;
00113 
00114       UInt neg_;
00115     };
00116   }
00117 }
00118 #endif // OPENMS_MATH_STATISTICS_ROCCURVE_H

OpenMS / TOPP release 1.10.0 Documentation generated on Thu Mar 7 2013 09:42:44 using doxygen 1.7.1