SILACClustering.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// $Maintainer: Lars Nilse $
// $Authors: Bastian Blank $
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#include <OpenMS/COMPARISON/CLUSTERING/HierarchicalClustering.h>
#include <OpenMS/FILTERING/DATAREDUCTION/SILACPattern.h>

#ifndef OPENMS_COMPARISON_CLUSTERING_SILACCLUSTERING_H
#define OPENMS_COMPARISON_CLUSTERING_SILACCLUSTERING_H

namespace OpenMS
{
  class OPENMS_DLLAPI SILACClustering :
    public HierarchicalClustering<SILACPattern *>
  {
public:
    const DoubleReal rt_min;
    const DoubleReal rt_max_spacing;

    SILACClustering(const PointCoordinate & cluster_dimension, DoubleReal rt_min, DoubleReal rt_max_spacing) :
      HierarchicalClustering<SILACPattern *>(cluster_dimension), rt_min(rt_min), rt_max_spacing(rt_max_spacing)
    {}

    void cluster();

protected:
    void removeSmall_();
    void joinLarge_();
  };
}

#endif /* OPENMS_COMPARISON_CLUSTERING_HIERARCHICALCLUSTERING_H */