SuffixArrayTrypticSeqan.h

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// $Maintainer: Clemens Groepl,Andreas Bertsch$
// $Authors: Chris Bauer $
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#ifndef OPENMS_DATASTRUCTURES_SUFFIXARRAYTRYPTICSEQAN_H
#define OPENMS_DATASTRUCTURES_SUFFIXARRAYTRYPTICSEQAN_H

#include <OpenMS/DATASTRUCTURES/SuffixArraySeqan.h>

namespace OpenMS
{

  class OPENMS_DLLAPI SuffixArrayTrypticSeqan :
    public SuffixArraySeqan
  {

public:

    SuffixArrayTrypticSeqan(const String & st, const String & filename, const WeightWrapper::WEIGHTMODE weight_mode = WeightWrapper::MONO);

    bool isDigestingEnd(const char aa1, const char aa2) const;


  };
}

#endif //OPENMS_DATASTRUCTURES_SUFFIXARRAYTRYPTICSEQAN_H