Filters the top Peaks in the given spectra according to a given schema/thresholdset
| pot. predecessor tools |  SpectraFilter | pot. successor tools |
| PeakPickerWavelet | any tool operating on MS peak data (in mzML format) |
The command line parameters of this tool are:
SpectraFilterScaler -- Applies thresholdfilter to peak spectra.
Version: 1.10.0 Mar 7 2013, 08:30:22, Revision: unknown
Usage:
SpectraFilterScaler <options>
This tool has algoritm parameters which can only be used via an INI file and are not accessible from the command line!
Options (mandatory options marked with '*'):
-in <file>* Input file (valid formats: 'mzML')
-out <file>* Output file (valid formats: 'mzML')
Common TOPP options:
-ini <file> Use the given TOPP INI file
-threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1')
-write_ini <file> Writes the default configuration file
--help Shows options
--helphelp Shows all options (including advanced)
The following configuration subsections are valid:
- algorithm Algorithm parameter subsection.
You can write an example INI file using the '-write_ini' option.
Documentation of subsection parameters can be found in the
doxygen documentation or the INIFileEditor.
Have a look at OpenMS documentation for more information.
INI file documentation of this tool:
Legend:
required parameter
advanced parameter
+SpectraFilterScalerApplies thresholdfilter to peak spectra.
version1.10.0
Version of the tool that generated this parameters file.
++1Instance '1' section for 'SpectraFilterScaler'
in
input file *.mzML
out
output file *.mzML
log
Name of log file (created only when specified)
debug0
Sets the debug level
threads1
Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse
Disables progress logging to command linetrue,false
testfalse
Enables the test mode (needed for internal use only)true,false
For the parameters of the algorithm section see the class documentation:
OpenMS::Scaler