TransformationDescription.h

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//                   OpenMS -- Open-Source Mass Spectrometry
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// $Maintainer: Clemens Groepl $
// $Authors: Clemens Groepl, Hendrik Weisser $
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#ifndef OPENMS_ANALYSIS_MAPMATCHING_TRANSFORMATIONDESCRIPTION_H
#define OPENMS_ANALYSIS_MAPMATCHING_TRANSFORMATIONDESCRIPTION_H

#include <OpenMS/DATASTRUCTURES/Param.h>
#include <OpenMS/ANALYSIS/MAPMATCHING/TransformationModel.h>

namespace OpenMS
{
  class OPENMS_DLLAPI TransformationDescription
  {
    // friend class MapAlignmentAlgorithm;

public:

    typedef TransformationModel::DataPoint DataPoint;
    typedef TransformationModel::DataPoints DataPoints;

    TransformationDescription();
    TransformationDescription(const DataPoints & data);
    ~TransformationDescription();

    TransformationDescription(const TransformationDescription & rhs);
    TransformationDescription & operator=(const TransformationDescription & rhs);

    void fitModel(const String & model_type, const Param & params = Param());

    DoubleReal apply(DoubleReal value) const;

    const String & getModelType() const;

    static void getModelTypes(StringList & result);

    void setDataPoints(const DataPoints & data);

    const DataPoints & getDataPoints() const;

    void getModelParameters(Param & params) const;

    void invert();

protected:
    DataPoints data_;
    String model_type_;
    TransformationModel * model_;
  };

} // end of namespace OpenMS

#endif  // OPENMS_ANALYSIS_MAPMATCHING_TRANSFORMATIONDESCRIPTION_H