QCMerger

This application is used to provide data export from raw, id and feature data files generated via TOPP pipelines. It is intended to provide tables that can be read into R where QC metrics will be calculated.

The command line parameters of this tool are:

QCMerger -- produces qcml files
Version: 1.10.0 Mar  7 2013, 08:30:22, Revision: unknown

Usage:
  QCMerger <options>

Options (mandatory options marked with '*'):
  -in <files>*       List of qcml files to be merged. (valid formats: 'qcML')
  -out <file>*       Output extended/reduced qcML file (valid formats: 'qcML')
  -setname <string>  Use only when all given qcml files belong to one set, which will be held under the given
                     name.
                     
Common UTIL options:
  -ini <file>        Use the given TOPP INI file
  -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>  Writes the default configuration file
  --help             Shows options
  --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:

required parameter

advanced parameter

+QCMergerproduces qcml files

version1.10.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'QCMerger'

in[] List of qcml files to be merged.input file*.qcML

out Output extended/reduced qcML fileoutput file*.qcML

setname Use only when all given qcml files belong to one set, which will be held under the given name.

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

testfalse Enables the test mode (needed for internal use only)true,false